Wall clock time and date at job start Sun Mar 29 2020 21:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47262 * 2 1 4 4 C 1.36929 * 119.99803 * 263.78806 * 3 2 1 5 5 H 1.08001 * 120.00035 * 142.61565 * 4 3 2 6 6 C 1.38812 * 120.00260 * 322.61532 * 4 3 2 7 7 N 1.31618 * 120.00275 * 157.39377 * 6 4 3 8 8 Si 1.86797 * 119.99929 * 337.38719 * 6 4 3 9 9 H 1.48497 * 109.47029 * 95.71327 * 8 6 4 10 10 H 1.48503 * 109.47139 * 215.71982 * 8 6 4 11 11 H 1.48502 * 109.47201 * 335.71893 * 8 6 4 12 12 C 1.46497 * 119.99766 * 83.78576 * 3 2 1 13 13 C 1.53000 * 109.47129 * 90.00154 * 12 3 2 14 14 C 1.50703 * 109.47315 * 179.97438 * 13 12 3 15 15 C 1.38228 * 119.61510 * 124.99675 * 14 13 12 16 16 C 1.38624 * 119.16061 * 179.97438 * 15 14 13 17 17 C 1.38676 * 118.42121 * 0.02562 * 16 15 14 18 18 C 1.38183 * 119.16180 * 359.97438 * 17 16 15 19 19 N 1.31852 * 119.61879 * 304.73378 * 14 13 12 20 20 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47094 * 299.99685 * 1 2 3 22 22 H 1.08999 * 109.47090 * 59.99781 * 1 2 3 23 23 H 1.08998 * 109.47315 * 239.99813 * 2 1 3 24 24 H 1.09003 * 109.47133 * 119.99714 * 2 1 3 25 25 H 0.96999 * 120.00544 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47528 * 330.00450 * 12 3 2 27 27 H 1.08997 * 109.47062 * 209.99982 * 12 3 2 28 28 H 1.09007 * 109.47083 * 60.00252 * 13 12 3 29 29 H 1.08995 * 109.47372 * 300.00250 * 13 12 3 30 30 H 1.08005 * 120.42132 * 359.96771 * 15 14 13 31 31 H 1.08004 * 120.79293 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.41740 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.61533 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3675 1.9839 -1.1789 5 1 2.1496 3.0300 -1.3359 6 6 3.0016 1.2504 -2.1723 7 7 2.9450 1.6518 -3.4245 8 14 3.9353 -0.3064 -1.7319 9 1 3.0563 -1.4855 -1.9368 10 1 5.1348 -0.4263 -2.5992 11 1 4.3573 -0.2449 -0.3094 12 6 2.1330 2.1175 1.2613 13 6 3.5250 1.8959 1.8565 14 6 3.6432 2.6538 3.1537 15 6 4.0082 1.9831 4.3059 16 6 4.1146 2.6897 5.4938 17 6 3.8482 4.0505 5.4785 18 6 3.4886 4.6529 4.2880 19 7 3.4023 3.9500 3.1753 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.3884 1.1395 -4.1186 26 1 1.3776 1.7598 1.9609 27 1 1.9822 3.1810 1.0761 28 1 4.2805 2.2537 1.1569 29 1 3.6758 0.8324 2.0416 30 1 4.2079 0.9220 4.2810 31 1 4.3983 2.1922 6.4095 32 1 3.9217 4.6323 6.3854 33 1 3.2791 5.7122 4.2677 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044411835.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:26 Heat of formation + Delta-G solvation = 31.243701 kcal Electronic energy + Delta-G solvation = -14656.501678 eV Core-core repulsion = 12295.940397 eV Total energy + Delta-G solvation = -2360.561281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04270 -38.22923 -34.59594 -33.67375 -33.17022 -31.42842 -29.46520 -26.21640 -24.80651 -24.23552 -22.93408 -21.52671 -18.71124 -17.65932 -17.32678 -16.94469 -16.52664 -15.94612 -15.42465 -15.04171 -14.77079 -14.40460 -14.16783 -13.77677 -13.63584 -13.33476 -13.08083 -12.79886 -12.58118 -12.45441 -12.19566 -11.73902 -11.64204 -11.36771 -10.74078 -10.62935 -10.23190 -9.83506 -8.76856 -8.18655 -5.55962 0.25398 0.46496 1.30918 1.41691 1.53547 2.43490 2.93179 3.05970 3.28914 3.56141 3.97819 4.09206 4.23845 4.30201 4.33057 4.39673 4.53376 4.67791 4.75456 4.77244 4.81859 4.90555 5.01586 5.13682 5.18009 5.32861 5.35828 5.38033 5.49881 5.90034 5.96849 6.18319 7.00990 7.20591 7.65151 8.06724 9.01777 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.007434 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.398762 B = 3765.411549 C = 3859.397645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.121 3.879 3 N -0.617 5.617 4 C -0.254 4.254 5 H 0.033 0.967 6 C -0.023 4.023 7 N -0.952 5.952 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.310 1.310 11 H -0.250 1.250 12 C 0.168 3.832 13 C -0.084 4.084 14 C 0.118 3.882 15 C -0.179 4.179 16 C -0.072 4.072 17 C -0.177 4.177 18 C 0.083 3.917 19 N -0.521 5.521 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.030 0.970 23 H 0.036 0.964 24 H 0.065 0.935 25 H 0.262 0.738 26 H 0.057 0.943 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -1.546 20.446 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.003 4.003 3 N -0.340 5.340 4 C -0.384 4.384 5 H 0.051 0.949 6 C -0.219 4.219 7 N -0.596 5.596 8 Si 0.772 3.228 9 H -0.199 1.199 10 H -0.239 1.239 11 H -0.174 1.174 12 C 0.043 3.957 13 C -0.124 4.124 14 C -0.019 4.019 15 C -0.199 4.199 16 C -0.098 4.098 17 C -0.197 4.197 18 C -0.074 4.074 19 N -0.231 5.231 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.166 0.834 31 H 0.185 0.815 32 H 0.185 0.815 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.210 -1.156 19.520 19.591 hybrid contribution 0.755 -0.708 -0.021 1.035 sum 1.965 -1.864 19.499 19.686 Atomic orbital electron populations 1.22134 0.97117 1.01276 1.00919 1.21301 0.94275 0.85344 0.99414 1.44323 1.74835 1.12236 1.02597 1.18623 1.32288 0.95548 0.91987 0.94912 1.26120 0.98872 1.02050 0.94888 1.70013 1.46033 1.43065 1.00519 0.85835 0.78004 0.80105 0.78848 1.19925 1.23895 1.17399 1.20736 0.93485 0.95568 0.85948 1.21067 1.00603 0.98573 0.92197 1.21357 0.94686 0.90172 0.95720 1.22225 1.02084 1.02383 0.93163 1.21997 0.94810 0.94423 0.98555 1.22480 1.00925 0.96117 1.00163 1.23244 0.95100 1.00993 0.88048 1.67458 1.15311 1.08458 1.31875 0.91043 0.92464 0.95091 0.94552 0.91700 0.92880 0.92464 0.94424 0.92980 0.90234 0.83394 0.81464 0.81500 0.81186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 10.23 71.98 0.74 -4.98 16 2 C 0.12 5.11 5.01 86.38 0.43 5.55 16 3 N -0.62 -29.96 2.08 -702.02 -1.46 -31.42 16 4 C -0.25 -15.06 9.91 84.03 0.83 -14.22 16 5 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 6 C -0.02 -1.40 5.26 84.86 0.45 -0.95 16 7 N -0.95 -61.27 13.97 21.65 0.30 -60.97 16 8 Si 0.94 46.69 25.05 68.60 1.72 48.41 16 9 H -0.27 -12.71 6.69 99.48 0.67 -12.05 16 10 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 11 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 12 C 0.17 7.07 5.55 86.38 0.48 7.55 16 13 C -0.08 -3.18 5.94 29.85 0.18 -3.00 16 14 C 0.12 3.83 6.17 42.55 0.26 4.09 16 15 C -0.18 -4.35 9.71 22.36 0.22 -4.13 16 16 C -0.07 -1.32 10.18 22.47 0.23 -1.09 16 17 C -0.18 -3.22 10.11 22.36 0.23 -3.00 16 18 C 0.08 2.05 11.18 84.67 0.95 3.00 16 19 N -0.52 -17.55 9.89 -183.88 -1.82 -19.37 16 20 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 21 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.04 1.69 3.60 -2.39 -0.01 1.68 16 24 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 25 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 26 H 0.06 2.13 8.05 -2.39 -0.02 2.11 16 27 H 0.04 1.75 7.85 -2.39 -0.02 1.73 16 28 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 29 H 0.08 2.73 7.87 -2.39 -0.02 2.71 16 30 H 0.15 2.97 7.95 -2.91 -0.02 2.95 16 31 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 32 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -72.01 277.67 4.76 -67.25 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.03 Total: 7.29 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.99 Total: -11.19 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -2.98 Total: -111.76 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.72 Total: 48.41 kcal Total: -72.01 4.76 -67.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044411835.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.493 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds