Wall clock time and date at job start Sun Mar 29 2020 21:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 C 1.38643 * 120.79006 * 269.71615 * 15 14 12 17 17 C 1.38210 * 119.16306 * 179.79611 * 16 15 14 18 18 N 1.31866 * 120.76276 * 0.49309 * 17 16 15 19 19 C 1.31866 * 121.72564 * 359.73783 * 18 17 16 20 20 C 1.38210 * 120.76890 * 0.02599 * 19 18 17 21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 26 26 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 27 27 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 28 28 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 29 29 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 30 30 H 1.08001 * 120.41776 * 0.02562 * 16 15 14 31 31 H 1.07998 * 119.61777 * 180.20455 * 17 16 15 32 32 H 1.08004 * 119.62152 * 180.02562 * 19 18 17 33 33 H 1.07991 * 120.42290 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 6 3.0582 -0.7573 -4.2971 17 6 3.3088 -1.5707 -5.3860 18 7 2.4184 -2.4582 -5.7840 19 6 1.2648 -2.6095 -5.1633 20 6 0.9465 -1.8348 -4.0639 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 0.7089 1.1611 3.4845 25 1 3.8029 -1.3532 -0.3068 26 1 3.8209 -1.3107 -2.0864 27 1 3.9187 0.2052 -1.1592 28 1 0.4722 0.1326 -2.3564 29 1 2.0519 0.9348 -2.5279 30 1 3.7896 -0.0293 -3.9784 31 1 4.2427 -1.4752 -5.9199 32 1 0.5604 -3.3473 -5.5182 33 1 0.0003 -1.9637 -3.5596 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:33 Heat of formation + Delta-G solvation = 22.613822 kcal Electronic energy + Delta-G solvation = -14752.837359 eV Core-core repulsion = 12391.901859 eV Total energy + Delta-G solvation = -2360.935500 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.10397 -38.72443 -35.21471 -33.49725 -32.09717 -30.95428 -28.84706 -26.74529 -25.25791 -24.23216 -22.85378 -21.20557 -18.45762 -17.52440 -17.28403 -16.88715 -16.44440 -15.92117 -15.64410 -15.11556 -14.54643 -14.52148 -14.19666 -13.80948 -13.30617 -12.97321 -12.94378 -12.62099 -12.59680 -12.29518 -12.12156 -11.94739 -11.75691 -10.95224 -10.60864 -10.41489 -10.37962 -9.98955 -8.99231 -8.12707 -6.24339 0.27920 0.34089 1.42009 1.43125 1.52823 2.41516 2.89223 3.16105 3.46644 3.65126 3.79127 3.92086 4.24803 4.28705 4.45966 4.51209 4.64899 4.70293 4.78119 4.89991 4.97624 5.00984 5.05150 5.11939 5.23704 5.48000 5.52434 5.70573 5.76669 5.84760 6.24181 6.33894 6.67046 6.89374 7.07617 7.44827 8.93220 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.050797 B = 0.006505 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.081107 B = 4303.490615 C = 4462.255942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.216 3.784 3 H -0.034 1.034 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.276 1.276 10 H -0.270 1.270 11 H -0.284 1.284 12 N -0.537 5.537 13 C 0.040 3.960 14 C 0.085 3.915 15 C -0.033 4.033 16 C -0.172 4.172 17 C 0.092 3.908 18 N -0.512 5.512 19 C 0.092 3.908 20 C -0.161 4.161 21 H 0.032 0.968 22 H 0.060 0.940 23 H 0.034 0.966 24 H 0.262 0.738 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.011 0.989 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.141 0.859 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -2.995 -12.181 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.109 3.891 3 H -0.017 1.017 4 C -0.559 4.559 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.194 1.194 11 H -0.209 1.209 12 N -0.261 5.261 13 C -0.108 4.108 14 C -0.043 4.043 15 C -0.042 4.042 16 C -0.192 4.192 17 C -0.065 4.065 18 N -0.222 5.222 19 C -0.065 4.065 20 C -0.182 4.182 21 H 0.051 0.949 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.159 0.841 31 H 0.197 0.803 32 H 0.196 0.804 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.928 -3.866 -12.747 13.460 hybrid contribution 0.296 1.251 1.899 2.293 sum 2.224 -2.615 -10.849 11.379 Atomic orbital electron populations 1.21689 0.97069 0.99416 0.99921 1.19082 0.92844 0.90257 0.86874 1.01664 1.21414 1.31218 1.12296 0.90927 0.92367 1.25689 0.95368 0.95731 1.01836 1.70011 1.37728 1.24080 1.24096 0.85540 0.78829 0.78241 0.78920 1.20165 1.19411 1.20923 1.62090 1.10408 1.52234 1.01411 1.22226 0.87845 0.99053 1.01677 1.21133 1.01542 0.93675 0.87925 1.20331 0.94285 0.95285 0.94305 1.22232 0.97471 1.02063 0.97457 1.23097 0.98768 0.90690 0.93914 1.67695 1.03370 1.19746 1.31352 1.23107 0.93878 0.97600 0.91874 1.22203 1.01357 0.96465 0.98129 0.94851 0.92089 0.94754 0.92890 0.92405 0.91123 0.97050 0.89625 0.94678 0.84098 0.80342 0.80442 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.76 71.98 0.63 -5.25 16 2 C 0.22 10.84 2.06 44.17 0.09 10.93 16 3 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 4 C -0.52 -28.37 7.93 25.60 0.20 -28.17 16 5 H 0.06 3.17 6.39 -2.91 -0.02 3.15 16 6 C 0.01 0.69 5.30 84.66 0.45 1.13 16 7 N -0.92 -52.36 11.32 21.45 0.24 -52.12 16 8 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 N -0.54 -22.53 4.61 -906.04 -4.18 -26.71 16 13 C 0.04 1.56 8.93 127.69 1.14 2.70 16 14 C 0.08 2.94 4.98 85.56 0.43 3.36 16 15 C -0.03 -0.99 4.90 -19.67 -0.10 -1.09 16 16 C -0.17 -4.43 8.07 22.36 0.18 -4.25 16 17 C 0.09 2.18 11.18 84.68 0.95 3.13 16 18 N -0.51 -13.57 10.36 -195.84 -2.03 -15.60 16 19 C 0.09 2.25 11.18 84.68 0.95 3.20 16 20 C -0.16 -4.37 9.82 22.36 0.22 -4.15 16 21 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 23 H 0.03 1.42 6.20 -2.38 -0.01 1.40 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.06 2.44 6.23 -2.39 -0.01 2.42 16 26 H 0.07 2.35 5.93 -2.39 -0.01 2.33 16 27 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.09 2.96 5.79 -2.38 -0.01 2.94 16 29 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.14 3.22 8.03 -2.91 -0.02 3.20 16 31 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 33 H 0.14 3.54 8.06 -2.92 -0.02 3.52 16 Total: -1.00 -61.23 269.91 2.29 -58.95 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.09 Total: 8.53 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 5.14 Total: -18.44 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -5.97 Total: -94.42 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -61.23 2.29 -58.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.561 kcal (2) G-P(sol) polarization free energy of solvation -61.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds