Wall clock time and date at job start Sun Mar 29 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99925 * 2 1 4 4 H 1.48495 * 109.47085 * 239.99800 * 3 2 1 5 5 H 1.48505 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47067 * 119.99793 * 3 2 1 7 7 C 1.37879 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99186 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00259 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.35913 * 116.99963 * 180.02562 * 10 9 7 12 12 C 1.38857 * 119.98295 * 0.02562 * 11 10 9 13 13 C 1.38250 * 120.23457 * 179.97438 * 12 11 10 14 14 C 1.38006 * 120.20742 * 359.74513 * 13 12 11 15 15 C 1.39566 * 119.96717 * 0.51132 * 14 13 12 16 16 C 1.47855 * 120.11904 * 179.76597 * 15 14 13 17 17 N 1.34777 * 119.99755 * 359.72074 * 16 15 14 18 18 O 1.21553 * 119.99955 * 179.72373 * 16 15 14 19 19 C 1.38453 * 119.98459 * 180.02562 * 11 10 9 20 20 H 0.96996 * 120.00308 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46906 * 60.00496 * 9 7 2 22 22 H 1.09000 * 109.47582 * 299.99831 * 9 7 2 23 23 H 1.08001 * 119.88392 * 359.96385 * 12 11 10 24 24 H 1.08001 * 119.89263 * 180.02562 * 13 12 11 25 25 H 1.08002 * 120.01805 * 180.25505 * 14 13 12 26 26 H 0.97001 * 120.00485 * 0.02562 * 17 16 15 27 27 H 0.97005 * 119.99790 * 179.72355 * 17 16 15 28 28 H 1.07998 * 120.10369 * 0.04002 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.6602 -4.8412 -0.0024 12 6 0.2836 -5.0228 -0.0025 13 6 -0.2504 -6.2980 -0.0038 14 6 0.5815 -7.3991 -0.0102 15 6 1.9664 -7.2265 -0.0048 16 6 2.8608 -8.4039 -0.0065 17 7 2.3389 -9.6465 -0.0076 18 8 4.0667 -8.2511 -0.0068 19 6 2.5040 -5.9390 -0.0031 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8897 23 1 -0.3723 -4.1647 -0.0014 24 1 -1.3220 -6.4328 -0.0042 25 1 0.1610 -8.3939 -0.0154 26 1 1.3766 -9.7685 -0.0077 27 1 2.9257 -10.4190 -0.0128 28 1 3.5748 -5.7991 -0.0024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057835659.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:15 Heat of formation + Delta-G solvation = -85.955036 kcal Electronic energy + Delta-G solvation = -13991.780252 eV Core-core repulsion = 11392.585096 eV Total energy + Delta-G solvation = -2599.195156 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34011 -40.16402 -37.99654 -35.12574 -34.77528 -32.17464 -31.14014 -29.42080 -25.85036 -24.40466 -23.33049 -21.42305 -19.58917 -18.82470 -17.95004 -17.54969 -17.01875 -16.56683 -16.56163 -16.01034 -15.78592 -15.16221 -14.71875 -14.50105 -13.73180 -13.63438 -13.10902 -12.84182 -12.83854 -12.33411 -12.06414 -12.00599 -11.41697 -11.21573 -10.74806 -10.72903 -10.05581 -9.18373 -8.41472 -6.55517 -0.22688 0.43368 1.38413 1.42746 1.51127 1.81462 2.20877 2.40041 2.82990 2.84756 2.93375 3.80330 3.87839 4.10346 4.16297 4.35600 4.55966 4.69108 4.90969 4.95062 5.19824 5.31932 5.38317 5.49415 5.72375 5.81586 5.88747 6.41473 6.46656 6.75375 7.16360 7.28419 8.70391 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.058699 B = 0.005525 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.894367 B = 5066.724560 C = 5528.473335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.986 3.014 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.564 4.564 8 H 0.063 0.937 9 C 0.211 3.789 10 O -0.342 6.342 11 C 0.103 3.897 12 C -0.196 4.196 13 C -0.077 4.077 14 C -0.112 4.112 15 C -0.112 4.112 16 C 0.567 3.433 17 N -0.819 5.819 18 O -0.589 6.589 19 C -0.126 4.126 20 H 0.275 0.725 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.122 0.878 24 H 0.170 0.830 25 H 0.180 0.820 26 H 0.420 0.580 27 H 0.416 0.584 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -17.108 -0.025 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.601 4.601 8 H 0.081 0.919 9 C 0.138 3.862 10 O -0.256 6.256 11 C 0.056 3.944 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.130 4.130 15 C -0.115 4.115 16 C 0.353 3.647 17 N -0.384 5.384 18 O -0.470 6.470 19 C -0.145 4.145 20 H 0.084 0.916 21 H 0.025 0.975 22 H 0.025 0.975 23 H 0.140 0.860 24 H 0.187 0.813 25 H 0.198 0.802 26 H 0.253 0.747 27 H 0.249 0.751 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.838 -16.678 -0.023 16.918 hybrid contribution 0.020 0.905 -0.002 0.905 sum -2.818 -15.773 -0.025 16.023 Atomic orbital electron populations 1.70020 1.07562 1.29185 1.49256 1.25908 0.96059 1.03169 0.93354 0.85197 0.78153 0.76475 0.79405 1.19070 1.19481 1.19059 1.21300 0.94340 0.90419 1.54025 0.91889 1.20230 0.88356 0.82312 0.95271 1.86074 1.39090 1.12915 1.87555 1.19448 0.93117 0.85424 0.96363 1.21779 0.93433 1.00610 1.05697 1.21316 1.01975 0.89931 0.96191 1.21552 0.90261 1.00992 1.00227 1.19694 0.94965 0.91634 1.05212 1.18221 0.86802 0.84685 0.75000 1.43430 1.13171 1.06056 1.75787 1.90801 1.17077 1.87068 1.52061 1.20456 0.99631 0.90306 1.04153 0.91592 0.97535 0.97527 0.86013 0.81252 0.80239 0.74671 0.75136 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 13.29 21.45 0.28 -53.49 15 2 C 0.02 0.85 5.46 84.66 0.46 1.32 15 3 Si 0.99 43.83 29.54 68.60 2.03 45.86 15 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 5 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 7 C -0.56 -33.59 9.43 25.60 0.24 -33.35 15 8 H 0.06 3.74 7.81 -2.91 -0.02 3.72 15 9 C 0.21 11.85 4.49 71.23 0.32 12.17 15 10 O -0.34 -17.93 10.12 -92.57 -0.94 -18.87 15 11 C 0.10 4.40 6.68 22.47 0.15 4.55 15 12 C -0.20 -7.08 9.03 22.42 0.20 -6.88 15 13 C -0.08 -1.87 10.03 22.22 0.22 -1.64 15 14 C -0.11 -2.30 9.54 22.54 0.21 -2.08 15 15 C -0.11 -3.22 5.87 -20.10 -0.12 -3.34 15 16 C 0.57 15.06 8.05 86.79 0.70 15.76 15 17 N -0.82 -11.06 8.82 -175.59 -1.55 -12.61 15 18 O -0.59 -21.47 17.18 -3.88 -0.07 -21.53 15 19 C -0.13 -4.83 9.53 22.63 0.22 -4.61 15 20 H 0.28 14.82 8.31 -92.71 -0.77 14.05 15 21 H 0.01 0.39 7.66 -2.38 -0.02 0.38 15 22 H 0.01 0.40 7.66 -2.39 -0.02 0.38 15 23 H 0.12 4.76 6.28 -2.91 -0.02 4.74 15 24 H 0.17 2.73 8.06 -2.91 -0.02 2.70 15 25 H 0.18 1.56 6.40 -2.91 -0.02 1.54 15 26 H 0.42 2.46 6.86 -92.71 -0.64 1.82 15 27 H 0.42 4.27 8.93 -92.70 -0.83 3.44 15 28 H 0.12 4.91 7.65 -2.91 -0.02 4.89 15 Total: -1.00 -75.36 253.99 2.11 -73.25 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -0.26 Total: 5.50 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 2.61 Total: -18.11 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -1.26 Total: -66.10 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.00 Total: -40.40 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -75.36 2.11 -73.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057835659.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.705 kcal (2) G-P(sol) polarization free energy of solvation -75.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds