Wall clock time and date at job start Sun Mar 29 2020 21:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38677 * 120.41881 * 2 1 4 4 C 1.38628 * 118.41857 * 179.97438 * 3 2 1 5 5 C 1.38215 * 119.16579 * 0.02562 * 4 3 2 6 6 N 1.31854 * 120.76332 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72838 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.61911 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47173 * 90.00247 * 8 7 6 10 10 C 1.46902 * 111.00190 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47158 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47023 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00148 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00397 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00557 * 180.02562 * 14 12 11 16 16 Si 1.86809 * 119.99489 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46757 * 90.00330 * 16 14 12 18 18 H 1.48501 * 109.46887 * 209.99902 * 16 14 12 19 19 H 1.48494 * 109.47262 * 330.00581 * 16 14 12 20 20 H 1.08996 * 109.47087 * 89.99893 * 1 2 3 21 21 H 1.09004 * 109.46666 * 209.99686 * 1 2 3 22 22 H 1.08994 * 109.46982 * 329.99952 * 1 2 3 23 23 H 1.08003 * 120.78604 * 359.96123 * 3 2 1 24 24 H 1.08005 * 120.41354 * 179.97438 * 4 3 2 25 25 H 1.07995 * 119.62265 * 180.02562 * 5 4 3 26 26 H 1.09011 * 109.46908 * 210.00177 * 8 7 6 27 27 H 1.09003 * 109.47334 * 329.99700 * 8 7 6 28 28 H 1.00901 * 110.99927 * 56.04577 * 9 8 7 29 29 H 1.09000 * 109.47328 * 300.00263 * 10 9 8 30 30 H 1.09002 * 109.46941 * 59.99847 * 10 9 8 31 31 H 1.08995 * 109.47090 * 300.00384 * 11 10 9 32 32 H 1.08997 * 109.46553 * 60.00422 * 11 10 9 33 33 H 0.97004 * 119.99727 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2256 -0.0822 0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0000 8 6 1.4541 -2.4972 -0.0006 9 7 1.2090 -2.9217 1.3841 10 6 0.4750 -4.1936 1.4228 11 6 0.2396 -4.6026 2.8783 12 6 -0.5128 -5.9077 2.9179 13 1 -0.7945 -6.3968 1.9971 14 6 -0.8416 -6.4775 4.1296 15 7 -1.4977 -7.6167 4.1642 16 14 -0.3537 -5.6318 5.7222 17 1 -1.4372 -4.7081 6.1442 18 1 -0.1348 -6.6530 6.7779 19 1 0.8984 -4.8621 5.5106 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.6889 2.1424 -0.0006 24 1 4.1735 2.0593 0.0001 25 1 5.3046 -0.1285 0.0014 26 1 0.5017 -2.3673 -0.5148 27 1 2.0438 -3.2563 -0.5144 28 1 0.7193 -2.2062 1.9004 29 1 -0.4841 -4.0752 0.9186 30 1 1.0576 -4.9647 0.9188 31 1 1.1988 -4.7211 3.3820 32 1 -0.3429 -3.8316 3.3825 33 1 -1.7293 -8.0173 5.0167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070908754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:12 Heat of formation + Delta-G solvation = 23.109750 kcal Electronic energy + Delta-G solvation = -14134.294005 eV Core-core repulsion = 11773.380010 eV Total energy + Delta-G solvation = -2360.913995 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39663 -36.23359 -33.74543 -33.14301 -32.00250 -29.77015 -27.55973 -25.92837 -23.45608 -22.48941 -21.42879 -20.36853 -16.85568 -16.74109 -16.60728 -15.30265 -14.87463 -14.58459 -14.19258 -13.73221 -13.37873 -13.21487 -12.83432 -12.78157 -12.63492 -12.44570 -11.94628 -11.41510 -11.31112 -10.96907 -10.06367 -9.94574 -9.83461 -9.72536 -9.37090 -9.21711 -8.86417 -8.51676 -7.94371 -6.02566 -4.00876 1.01810 1.22137 3.33726 3.41489 3.48512 3.68395 4.26968 4.48477 4.57376 4.69571 4.81516 4.90197 4.96249 5.28480 5.32158 5.43078 5.45859 5.53369 5.63193 5.84162 5.91258 6.07056 6.14031 6.21948 6.28504 6.64647 6.77753 7.12270 7.38006 7.59872 7.74408 7.89506 8.03871 8.54797 9.01478 9.59983 11.10730 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.044878 B = 0.005249 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.765505 B = 5333.468152 C = 5400.170090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.134 4.134 3 C -0.079 4.079 4 C -0.177 4.177 5 C 0.092 3.908 6 N -0.464 5.464 7 C 0.141 3.859 8 C 0.104 3.896 9 N -0.684 5.684 10 C 0.074 3.926 11 C -0.010 4.010 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.263 1.263 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.153 0.847 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.333 0.667 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.008 0.992 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 18.947 -8.961 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C -0.105 4.105 4 C -0.197 4.197 5 C -0.065 4.065 6 N -0.172 5.172 7 C 0.003 3.997 8 C -0.026 4.026 9 N -0.315 5.315 10 C -0.054 4.054 11 C -0.048 4.048 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.187 1.187 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.149 0.851 24 H 0.149 0.851 25 H 0.171 0.829 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.151 0.849 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.698 17.682 -8.778 21.189 hybrid contribution -1.053 1.546 0.667 1.986 sum 6.645 19.228 -8.110 21.901 Atomic orbital electron populations 1.20802 0.90291 1.03379 1.02648 1.20794 0.97560 0.93720 1.01554 1.21437 0.94191 0.97886 0.96997 1.22101 0.95257 0.99574 1.02814 1.22761 1.00301 0.87691 0.95747 1.67529 1.07844 1.31195 1.10662 1.21169 0.89719 0.94461 0.94383 1.20820 0.97175 0.92417 0.92181 1.60589 1.53758 1.06471 1.10719 1.22001 0.94358 0.88795 1.00214 1.19549 0.97064 0.96533 0.91625 1.21062 1.35531 1.04890 0.94432 0.91048 1.24994 0.94517 0.94689 0.99148 1.69916 1.40192 1.18162 1.26039 0.86764 0.79762 0.79454 0.83274 1.20413 1.21404 1.18743 0.90826 0.90931 0.91191 0.85076 0.85051 0.82930 0.93684 0.89370 0.84934 0.95826 0.91380 0.95564 0.97334 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.21 36.01 0.33 -0.78 16 2 C -0.13 -1.59 5.90 -104.48 -0.62 -2.20 16 3 C -0.08 -0.80 9.86 -39.28 -0.39 -1.19 16 4 C -0.18 -1.74 10.11 -39.45 -0.40 -2.13 16 5 C 0.09 1.09 11.18 -17.55 -0.20 0.89 16 6 N -0.46 -6.99 10.27 -9.48 -0.10 -7.09 16 7 C 0.14 2.03 6.29 -82.59 -0.52 1.51 16 8 C 0.10 1.56 5.22 -4.98 -0.03 1.54 16 9 N -0.68 -12.14 6.49 -115.06 -0.75 -12.89 16 10 C 0.07 1.52 5.62 -3.82 -0.02 1.50 16 11 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 12 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 16 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.07 0.79 6.05 -51.93 -0.31 0.47 16 22 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 23 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 24 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 25 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.05 0.60 6.69 -51.92 -0.35 0.26 16 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.33 5.58 8.04 -39.29 -0.32 5.26 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 32 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -32.60 278.46 -7.64 -40.23 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.71 Total: 0.20 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.38 Total: -14.73 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -0.07 Total: -47.41 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.60 -7.64 -40.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070908754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.344 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds