Wall clock time and date at job start Sun Mar 29 2020 21:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47059 * 2 1 4 4 N 1.30497 * 125.65262 * 270.17960 * 3 2 1 5 5 C 1.34122 * 109.25932 * 180.29090 * 4 3 2 6 6 C 1.34673 * 108.01902 * 359.72259 * 5 4 3 7 7 N 1.35040 * 125.64809 * 89.99669 * 3 2 1 8 8 C 1.46499 * 126.39959 * 359.97438 * 7 3 2 9 9 C 1.53001 * 109.47165 * 87.60983 * 8 7 3 10 10 C 1.50701 * 115.54931 * 176.73660 * 9 8 7 11 11 H 1.08002 * 120.00244 * 219.81120 * 10 9 8 12 12 C 1.37880 * 119.99986 * 39.81093 * 10 9 8 13 13 N 1.31519 * 119.99943 * 9.60148 * 12 10 9 14 14 Si 1.86798 * 120.00151 * 189.60075 * 12 10 9 15 15 H 1.48497 * 109.47142 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.46927 * 299.99921 * 14 12 10 17 17 H 1.48494 * 109.47061 * 60.00001 * 14 12 10 18 18 C 1.53000 * 117.51932 * 322.44180 * 9 8 7 19 19 C 1.52998 * 59.99988 * 107.47738 * 18 9 8 20 20 H 1.09009 * 109.47423 * 60.00169 * 1 2 3 21 21 H 1.09003 * 109.47322 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47441 * 299.99709 * 1 2 3 23 23 H 1.09001 * 109.47003 * 240.00000 * 2 1 3 24 24 H 1.08996 * 109.46861 * 119.99960 * 2 1 3 25 25 H 1.07995 * 125.99183 * 179.72037 * 5 4 3 26 26 H 1.07993 * 126.59227 * 180.02562 * 6 5 4 27 27 H 1.09003 * 109.46715 * 327.60998 * 8 7 3 28 28 H 1.09002 * 109.47001 * 207.61125 * 8 7 3 29 29 H 0.96994 * 119.99870 * 174.96487 * 13 12 10 30 30 H 1.09001 * 117.49631 * 214.96853 * 18 9 8 31 31 H 1.08997 * 117.49802 * 359.97438 * 18 9 8 32 32 H 1.08994 * 117.50374 * 252.50520 * 19 18 9 33 33 H 1.09012 * 117.49674 * 107.48873 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2827 2.1391 -1.0604 5 6 2.7188 3.3497 -0.6819 6 6 2.7336 3.3850 0.6643 7 7 2.2946 2.1629 1.0974 8 6 2.1435 1.7374 2.4910 9 6 3.4305 1.0544 2.9581 10 6 3.4526 0.6286 4.4035 11 1 4.3522 0.7501 4.9886 12 6 2.3242 0.0839 4.9791 13 7 1.2938 -0.2392 4.2285 14 14 2.2592 -0.1953 6.8249 15 1 0.9474 -0.7877 7.1901 16 1 3.3486 -1.1222 7.2240 17 1 2.4302 1.1014 7.5280 18 6 4.1679 0.1708 1.9500 19 6 4.7471 1.5316 2.3420 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.0075 4.1549 -1.3410 26 1 3.0336 4.2176 1.2832 27 1 1.3117 1.0373 2.5689 28 1 1.9460 2.6075 3.1172 29 1 0.5295 -0.6890 4.6215 30 1 4.6690 -0.7185 2.3322 31 1 3.7360 0.0756 0.9537 32 1 4.6965 2.3317 1.6037 33 1 5.6294 1.5375 2.9822 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855364.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:43 Heat of formation + Delta-G solvation = 76.550960 kcal Electronic energy + Delta-G solvation = -15432.042696 eV Core-core repulsion = 13073.446086 eV Total energy + Delta-G solvation = -2358.596610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.51310 -36.81029 -33.20332 -32.49063 -32.11456 -28.04082 -26.59243 -25.28601 -23.23507 -21.41834 -20.45839 -19.78498 -18.42701 -16.68019 -15.97813 -15.05248 -14.71047 -14.22791 -13.68023 -13.37656 -12.92862 -12.84918 -12.39249 -12.02043 -11.86310 -11.60360 -11.11462 -11.09064 -10.85357 -10.67703 -10.43867 -10.27470 -9.90157 -9.47876 -9.16436 -8.97138 -8.62378 -8.21131 -7.66223 -6.29898 -4.32354 2.80231 3.16133 3.22573 3.25166 3.71551 3.76675 4.20228 4.80128 5.05822 5.34177 5.52308 5.69503 5.79109 5.84398 5.96457 5.99138 6.14872 6.25600 6.28557 6.36866 6.56793 6.58695 6.63016 6.65338 6.75219 6.96596 7.18285 7.27065 7.30702 7.46458 7.71216 7.94337 8.21834 8.64936 8.79830 9.28679 10.74782 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.010023 C = 0.008834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.241957 B = 2792.822076 C = 3168.692128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C 0.213 3.787 4 N -0.510 5.510 5 C -0.048 4.048 6 C -0.062 4.062 7 N -0.433 5.433 8 C 0.127 3.873 9 C 0.040 3.960 10 C -0.488 4.488 11 H 0.065 0.935 12 C 0.069 3.931 13 N -0.886 5.886 14 Si 0.902 3.098 15 H -0.285 1.285 16 H -0.276 1.276 17 H -0.274 1.274 18 C -0.203 4.203 19 C -0.210 4.210 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.158 0.842 26 H 0.163 0.837 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.268 0.732 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 2.293 -3.664 4.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 C -0.049 4.049 4 N -0.229 5.229 5 C -0.198 4.198 6 C -0.198 4.198 7 N -0.112 5.112 8 C 0.007 3.993 9 C 0.039 3.961 10 C -0.526 4.526 11 H 0.084 0.916 12 C -0.134 4.134 13 N -0.523 5.523 14 Si 0.729 3.271 15 H -0.210 1.210 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.240 4.240 19 C -0.247 4.247 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.175 0.825 26 H 0.180 0.820 27 H 0.156 0.844 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.209 1.958 -4.253 4.835 hybrid contribution 0.306 0.280 1.821 1.867 sum -0.903 2.238 -2.432 3.426 Atomic orbital electron populations 1.21658 0.94618 1.01660 1.01810 1.20063 0.96066 0.87955 1.04188 1.23032 1.03922 0.96389 0.81591 1.70126 1.19674 1.04220 1.28927 1.22051 1.08461 0.96572 0.92667 1.22589 1.09739 0.90960 0.96480 1.45886 1.45450 1.10648 1.09193 1.22073 1.02426 1.00242 0.74570 1.19226 0.86797 0.96667 0.93423 1.20468 0.97930 1.41534 0.92683 0.91644 1.25011 0.95192 0.94500 0.98658 1.69664 1.07554 1.39524 1.35596 0.86483 0.77457 0.78664 0.84519 1.21006 1.20097 1.19982 1.23127 1.07271 0.93472 1.00164 1.22961 0.99610 0.97855 1.04290 0.92952 0.92189 0.92485 0.90071 0.88506 0.82462 0.81997 0.84420 0.90974 0.92186 0.90443 0.90789 0.90866 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.89 37.16 0.37 -1.88 16 2 C -0.04 -0.79 5.25 -27.88 -0.15 -0.94 16 3 C 0.21 4.31 5.71 -155.42 -0.89 3.42 16 4 N -0.51 -10.46 11.25 -10.82 -0.12 -10.58 16 5 C -0.05 -0.89 11.87 -17.81 -0.21 -1.10 16 6 C -0.06 -1.15 9.81 -16.56 -0.16 -1.31 16 7 N -0.43 -8.79 1.93 -113.90 -0.22 -9.01 16 8 C 0.13 2.81 5.23 -4.04 -0.02 2.79 16 9 C 0.04 0.94 2.30 -155.66 -0.36 0.58 16 10 C -0.49 -12.43 9.02 -34.44 -0.31 -12.74 16 11 H 0.07 1.68 7.83 -52.49 -0.41 1.26 16 12 C 0.07 1.73 5.26 -17.82 -0.09 1.64 16 13 N -0.89 -22.25 10.90 55.43 0.60 -21.65 16 14 Si 0.90 19.60 29.55 -169.99 -5.02 14.57 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 18 C -0.20 -4.57 9.01 -26.73 -0.24 -4.81 16 19 C -0.21 -4.59 9.60 -26.73 -0.26 -4.84 16 20 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.10 1.92 6.30 -51.93 -0.33 1.59 16 25 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 26 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 27 H 0.14 3.24 5.59 -51.93 -0.29 2.95 16 28 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 30 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.07 1.63 4.55 -51.93 -0.24 1.40 16 32 H 0.07 1.56 6.03 -51.93 -0.31 1.24 16 33 H 0.07 1.60 8.14 -51.92 -0.42 1.17 16 LS Contribution 269.63 15.07 4.06 4.06 Total: -1.00 -26.50 269.63 -7.54 -34.03 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.52 Total: 7.77 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.32 Total: -19.20 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.26 Total: -41.24 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.50 -7.54 -34.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855364.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.585 kcal (2) G-P(sol) polarization free energy of solvation -26.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds