Wall clock time and date at job start Sun Mar 29 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34840 * 117.00145 * 2 1 4 4 O 1.21565 * 120.00103 * 0.02562 * 3 2 1 5 5 C 1.47011 * 119.99926 * 179.97438 * 3 2 1 6 6 C 1.39574 * 120.49009 * 354.66102 * 5 3 2 7 7 C 1.37791 * 120.14425 * 179.97438 * 6 5 3 8 8 C 1.39426 * 121.19774 * 0.02562 * 7 6 5 9 9 N 1.39144 * 119.50110 * 179.97438 * 8 7 6 10 10 C 1.38441 * 120.99403 * 359.74195 * 8 7 6 11 11 C 1.40493 * 119.77126 * 0.48840 * 10 8 7 12 12 C 1.40947 * 120.56774 * 179.78896 * 11 10 8 13 13 H 1.08003 * 119.99656 * 144.20096 * 12 11 10 14 14 C 1.40244 * 119.99995 * 324.48461 * 12 11 10 15 15 N 1.30637 * 120.00009 * 168.82521 * 14 12 11 16 16 Si 1.86798 * 120.00162 * 348.82630 * 14 12 11 17 17 H 1.48501 * 109.47333 * 86.36801 * 16 14 12 18 18 H 1.48499 * 109.47068 * 206.36925 * 16 14 12 19 19 H 1.48504 * 109.46869 * 326.37145 * 16 14 12 20 20 H 1.08997 * 109.46894 * 300.00233 * 1 2 3 21 21 H 1.09001 * 109.46701 * 60.00019 * 1 2 3 22 22 H 1.09001 * 109.47452 * 179.97438 * 1 2 3 23 23 H 1.08006 * 119.92491 * 359.97438 * 6 5 3 24 24 H 1.07998 * 119.40799 * 180.02562 * 7 6 5 25 25 H 0.97007 * 120.00398 * 0.02562 * 9 8 7 26 26 H 0.96998 * 120.00195 * 179.97438 * 9 8 7 27 27 H 1.08000 * 120.11297 * 180.28544 * 10 8 7 28 28 H 0.96997 * 120.00279 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2210 0.0005 5 6 3.5323 1.2783 0.0006 6 6 4.3021 0.1195 0.1130 7 6 5.6776 0.1998 0.1123 8 6 6.3294 1.4273 0.0009 9 7 7.7202 1.4674 0.0045 10 6 5.6136 2.6063 -0.1180 11 6 4.2090 2.5728 -0.1169 12 6 3.4636 3.7634 -0.2325 13 1 2.5349 3.7676 -0.7839 14 6 3.9306 4.9439 0.3635 15 7 3.3653 6.0868 0.0797 16 14 5.3612 4.8819 1.5631 17 1 6.6403 4.9575 0.8124 18 1 5.2698 6.0286 2.5021 19 1 5.3108 3.6101 2.3282 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 3.8184 -0.8422 0.2008 24 1 6.2616 -0.7045 0.1995 25 1 8.2290 0.6453 0.0837 26 1 8.1811 2.3174 -0.0730 27 1 6.1331 3.5488 -0.2081 28 1 3.6881 6.9033 0.4921 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221105521.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:27 Heat of formation + Delta-G solvation = -68.455910 kcal Electronic energy + Delta-G solvation = -14757.357284 eV Core-core repulsion = 12158.920947 eV Total energy + Delta-G solvation = -2598.436337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19582 -37.67684 -35.29549 -34.05226 -33.09104 -30.47904 -28.44370 -26.70890 -25.34925 -22.08298 -21.32200 -19.56603 -17.65594 -16.77827 -16.28987 -15.69454 -15.40169 -15.29100 -14.52099 -13.78343 -13.33597 -12.71656 -12.60267 -12.41841 -12.05793 -11.79824 -11.51945 -11.21439 -10.85895 -10.78490 -10.22122 -9.92633 -9.78168 -9.49748 -9.16060 -8.87821 -7.68491 -6.98570 -6.68186 -4.57317 2.17011 2.66820 3.07376 3.16472 3.30283 3.78681 3.88786 3.96323 4.53937 4.60629 5.37845 5.63977 5.72578 5.88531 5.94411 6.13624 6.34758 6.56941 6.64273 6.92450 7.06917 7.29953 7.38290 7.55399 7.65846 7.82679 8.22319 8.38270 8.45604 8.64640 8.79037 9.14129 10.00214 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.013992 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.092509 B = 2000.603274 C = 3094.723001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.377 6.377 3 C 0.503 3.497 4 O -0.513 6.513 5 C -0.280 4.280 6 C 0.019 3.981 7 C -0.317 4.317 8 C 0.270 3.730 9 N -0.885 5.885 10 C -0.322 4.322 11 C 0.157 3.843 12 C -0.394 4.394 13 H 0.116 0.884 14 C 0.079 3.921 15 N -0.790 5.790 16 Si 0.923 3.077 17 H -0.269 1.269 18 H -0.292 1.292 19 H -0.246 1.246 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.389 0.611 26 H 0.390 0.610 27 H 0.110 0.890 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -7.312 1.294 8.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.353 3.647 4 O -0.403 6.403 5 C -0.283 4.283 6 C 0.000 4.000 7 C -0.339 4.339 8 C 0.166 3.834 9 N -0.423 5.423 10 C -0.346 4.346 11 C 0.151 3.849 12 C -0.421 4.421 13 H 0.133 0.867 14 C -0.142 4.142 15 N -0.413 5.413 16 Si 0.750 3.250 17 H -0.195 1.195 18 H -0.220 1.220 19 H -0.169 1.169 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.127 0.873 24 H 0.115 0.885 25 H 0.215 0.785 26 H 0.217 0.783 27 H 0.127 0.873 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.161 -6.733 1.296 7.550 hybrid contribution 0.769 0.190 0.473 0.923 sum 3.930 -6.543 1.769 7.835 Atomic orbital electron populations 1.22960 0.78676 1.01916 1.01810 1.86575 1.21482 1.35186 1.86305 1.21209 0.89492 0.80280 0.73700 1.90800 1.66760 1.35107 1.47677 1.19549 0.86911 0.94483 1.27394 1.20699 0.92875 0.96225 0.90177 1.19734 0.94132 0.94629 1.25447 1.17629 0.82539 0.94082 0.89160 1.42459 1.04275 1.10389 1.85217 1.20487 0.93769 0.95484 1.24863 1.18184 0.90207 0.91104 0.85380 1.20001 1.07418 0.89804 1.24857 0.86667 1.26393 0.96884 0.94268 0.96640 1.69572 1.37246 0.99449 1.34989 0.86181 0.80063 0.78875 0.79893 1.19507 1.22002 1.16886 0.92796 0.92790 0.89507 0.87314 0.88452 0.78453 0.78300 0.87282 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.57 101.05 1.07 1.73 15 2 O -0.38 -7.73 9.84 -40.88 -0.40 -8.14 15 3 C 0.50 12.31 7.86 34.29 0.27 12.58 15 4 O -0.51 -13.97 13.61 -19.31 -0.26 -14.23 15 5 C -0.28 -6.91 6.07 -102.50 -0.62 -7.53 15 6 C 0.02 0.42 9.60 -39.25 -0.38 0.04 15 7 C -0.32 -6.38 9.80 -39.30 -0.39 -6.77 15 8 C 0.27 5.59 6.72 -84.02 -0.56 5.03 15 9 N -0.89 -14.06 9.05 32.32 0.29 -13.76 15 10 C -0.32 -7.61 7.03 -38.66 -0.27 -7.88 15 11 C 0.16 4.10 5.19 -104.67 -0.54 3.56 15 12 C -0.39 -11.13 8.29 -37.80 -0.31 -11.44 15 13 H 0.12 3.57 6.32 -52.48 -0.33 3.24 15 14 C 0.08 2.12 5.47 -17.31 -0.09 2.02 15 15 N -0.79 -21.31 13.92 55.56 0.77 -20.53 15 16 Si 0.92 21.01 24.57 -169.99 -4.18 16.83 15 17 H -0.27 -5.73 6.43 56.52 0.36 -5.36 15 18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 19 H -0.25 -5.81 7.03 56.52 0.40 -5.41 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.11 2.05 7.63 -52.48 -0.40 1.65 15 24 H 0.10 1.68 8.06 -52.49 -0.42 1.25 15 25 H 0.39 4.99 8.82 -40.82 -0.36 4.63 15 26 H 0.39 5.65 8.82 -40.82 -0.36 5.29 15 27 H 0.11 2.54 4.78 -52.49 -0.25 2.29 15 28 H 0.29 6.96 8.29 -40.82 -0.34 6.62 15 LS Contribution 245.29 15.07 3.70 3.70 Total: -1.00 -30.63 245.29 -4.48 -35.12 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -2.57 Total: 9.69 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.83 Total: -8.67 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 1.07 Total: -34.30 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.67 Total: -22.37 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.18 Total: 16.83 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.63 -4.48 -35.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221105521.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.339 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds