Wall clock time and date at job start Sun Mar 29 2020 21:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99713 * 2 1 4 4 H 1.48506 * 109.46885 * 240.00221 * 3 2 1 5 5 H 1.48500 * 109.47151 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46916 * 120.00534 * 3 2 1 7 7 C 1.38810 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99916 * 202.94701 * 7 2 1 9 9 N 1.36936 * 119.99949 * 22.94872 * 7 2 1 10 10 C 1.46499 * 120.00134 * 213.99096 * 9 7 2 11 11 C 1.53001 * 109.47221 * 275.65725 * 10 9 7 12 12 N 1.46895 * 109.47239 * 180.02562 * 11 10 9 13 13 C 1.46505 * 119.99925 * 33.99213 * 9 7 2 14 14 C 1.50698 * 109.47094 * 90.00012 * 13 9 7 15 15 C 1.38237 * 120.00034 * 90.00129 * 14 13 9 16 16 C 1.38240 * 120.00032 * 179.97438 * 15 14 13 17 17 C 1.38228 * 120.00063 * 359.97438 * 16 15 14 18 18 C 1.38244 * 119.99970 * 0.28019 * 17 16 15 19 19 C 1.38232 * 119.99770 * 359.50766 * 18 17 16 20 20 H 0.96997 * 119.99995 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46875 * 35.65874 * 10 9 7 22 22 H 1.09004 * 109.47069 * 155.65681 * 10 9 7 23 23 H 1.09006 * 109.46963 * 299.99687 * 11 10 9 24 24 H 1.08995 * 109.47053 * 59.99686 * 11 10 9 25 25 H 1.00899 * 111.00350 * 56.04100 * 12 11 10 26 26 H 1.00902 * 111.00327 * 180.02562 * 12 11 10 27 27 H 1.08997 * 109.47083 * 330.00004 * 13 9 7 28 28 H 1.09007 * 109.46968 * 209.99865 * 13 9 7 29 29 H 1.08000 * 120.00357 * 359.97194 * 15 14 13 30 30 H 1.07999 * 119.99979 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.00379 * 179.97438 * 17 16 15 32 32 H 1.07996 * 119.99829 * 179.72971 * 18 17 16 33 33 H 1.08000 * 120.00353 * 180.27763 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0261 -1.2392 0.3641 9 7 1.4069 -2.3409 -0.4634 10 6 1.7196 -3.6355 0.1468 11 6 2.9877 -4.2069 -0.4906 12 7 3.3009 -5.5052 0.1209 13 6 0.4487 -2.2646 -1.5690 14 6 1.1786 -2.4212 -2.8781 15 6 1.3564 -3.6786 -3.4242 16 6 2.0255 -3.8223 -4.6254 17 6 2.5164 -2.7085 -5.2806 18 6 2.3433 -1.4515 -4.7318 19 6 1.6703 -1.3075 -3.5329 20 1 -0.4850 0.8400 0.0004 21 1 1.8786 -3.5037 1.2171 22 1 0.8898 -4.3235 -0.0152 23 1 2.8287 -4.3387 -1.5609 24 1 3.8175 -3.5189 -0.3286 25 1 2.5211 -6.1405 0.0403 26 1 4.1353 -5.9034 -0.2832 27 1 -0.0550 -1.2982 -1.5473 28 1 -0.2885 -3.0610 -1.4665 29 1 0.9725 -4.5488 -2.9126 30 1 2.1647 -4.8047 -5.0518 31 1 3.0395 -2.8207 -6.2187 32 1 2.7306 -0.5818 -5.2415 33 1 1.5311 -0.3251 -3.1064 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236250687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:10 Heat of formation + Delta-G solvation = 24.450681 kcal Electronic energy + Delta-G solvation = -15107.823159 eV Core-core repulsion = 12746.967311 eV Total energy + Delta-G solvation = -2360.855848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08364 -37.77725 -35.36325 -33.35641 -32.00078 -31.63414 -28.38084 -27.39207 -24.43886 -23.26231 -22.36059 -21.74330 -18.72367 -17.53429 -17.06341 -16.66517 -16.04620 -15.89091 -15.55300 -15.25230 -14.64978 -14.47657 -14.12835 -13.83182 -13.41013 -13.19184 -12.93274 -12.74155 -12.45506 -12.20137 -12.10405 -11.83054 -11.61271 -11.58571 -10.55621 -9.75694 -9.55118 -9.36692 -8.63956 -7.86147 -5.43606 0.62386 0.65302 1.43123 1.45605 1.52095 2.48039 2.99750 3.22935 3.59975 4.11486 4.12313 4.21960 4.28947 4.35716 4.41904 4.56857 4.65576 4.77384 4.82132 4.95517 5.16909 5.25962 5.30200 5.40235 5.58799 5.67110 5.70314 5.76716 6.04082 6.26971 6.29204 6.45888 6.69840 7.13029 7.82499 8.33118 9.10507 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.012858 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.110310 B = 2177.183629 C = 3053.858785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.030 4.030 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.050 0.950 9 N -0.587 5.587 10 C 0.152 3.848 11 C 0.058 3.942 12 N -0.850 5.850 13 C 0.173 3.827 14 C -0.088 4.088 15 C -0.126 4.126 16 C -0.123 4.123 17 C -0.135 4.135 18 C -0.130 4.130 19 C -0.126 4.126 20 H 0.253 0.747 21 H 0.031 0.969 22 H 0.046 0.954 23 H 0.029 0.971 24 H 0.039 0.961 25 H 0.346 0.654 26 H 0.347 0.653 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.131 0.869 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -7.944 -8.979 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.775 3.225 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.391 4.391 8 H 0.067 0.933 9 N -0.307 5.307 10 C 0.026 3.974 11 C -0.075 4.075 12 N -0.382 5.382 13 C 0.047 3.953 14 C -0.090 4.090 15 C -0.144 4.144 16 C -0.141 4.141 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.145 4.145 20 H 0.063 0.937 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.158 0.842 26 H 0.160 0.840 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.825 -7.393 -8.231 11.706 hybrid contribution 0.151 0.865 -0.606 1.067 sum 3.976 -6.528 -8.837 11.684 Atomic orbital electron populations 1.70080 1.06613 1.26177 1.52805 1.25607 0.95521 1.00969 1.00601 0.85668 0.78236 0.80224 0.78416 1.20560 1.21529 1.20248 1.19086 0.94636 0.87351 1.37997 0.93253 1.43832 1.50295 1.02442 1.34145 1.20829 0.94608 0.86585 0.95372 1.22176 0.98631 0.90628 0.96080 1.58588 1.09601 1.05510 1.64464 1.19959 0.90301 1.01969 0.83058 1.20970 0.98186 0.93566 0.96298 1.21099 1.00579 0.96087 0.96677 1.21380 0.98059 0.99676 0.94982 1.21336 1.01041 0.91980 1.00965 1.21340 0.99190 0.98789 0.95522 1.21039 0.99504 0.98052 0.95913 0.93750 0.95060 0.93516 0.95245 0.94200 0.84154 0.84012 0.90600 0.94635 0.86264 0.83686 0.83537 0.85146 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.88 11.31 21.65 0.24 -52.64 16 2 C -0.03 -1.64 4.95 84.86 0.42 -1.22 16 3 Si 0.95 44.81 29.61 68.60 2.03 46.84 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.26 -14.40 9.48 84.03 0.80 -13.61 16 8 H 0.05 2.79 7.93 -2.91 -0.02 2.77 16 9 N -0.59 -29.28 2.44 -706.34 -1.73 -31.01 16 10 C 0.15 6.51 5.98 86.38 0.52 7.02 16 11 C 0.06 2.12 7.08 86.30 0.61 2.73 16 12 N -0.85 -24.45 9.62 -186.72 -1.80 -26.25 16 13 C 0.17 8.22 5.46 85.63 0.47 8.69 16 14 C -0.09 -3.62 5.44 -19.87 -0.11 -3.73 16 15 C -0.13 -4.25 7.87 22.27 0.18 -4.08 16 16 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 17 C -0.14 -3.76 10.05 22.27 0.22 -3.54 16 18 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 19 C -0.13 -5.20 9.70 22.27 0.22 -4.99 16 20 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 21 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 22 H 0.05 1.83 7.83 -2.39 -0.02 1.81 16 23 H 0.03 1.06 6.13 -2.38 -0.01 1.04 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.35 8.54 8.99 -89.69 -0.81 7.74 16 26 H 0.35 8.28 9.08 -89.69 -0.81 7.47 16 27 H 0.08 4.15 5.26 -2.39 -0.01 4.14 16 28 H 0.04 1.60 7.80 -2.38 -0.02 1.58 16 29 H 0.12 3.69 8.02 -2.91 -0.02 3.67 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 33 H 0.09 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -62.00 278.23 2.00 -59.99 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.51 Total: 23.11 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.77 Total: -20.04 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.28 Total: -109.89 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.00 2.00 -59.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236250687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.442 kcal (2) G-P(sol) polarization free energy of solvation -61.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds