Wall clock time and date at job start Sun Mar 29 2020 22:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99939 * 2 1 4 4 H 1.48496 * 109.47246 * 240.00086 * 3 2 1 5 5 H 1.48503 * 109.46868 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47182 * 119.99935 * 3 2 1 7 7 C 1.37881 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00041 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47205 * 179.97438 * 9 7 2 11 11 C 1.39190 * 119.99842 * 179.97438 * 10 9 7 12 12 C 1.39419 * 120.83465 * 359.97438 * 11 10 9 13 13 C 1.38234 * 119.26426 * 180.02562 * 12 11 10 14 14 N 1.31649 * 120.99328 * 0.02562 * 13 12 11 15 15 C 1.32832 * 121.82847 * 359.69847 * 14 13 12 16 16 C 1.48184 * 119.68998 * 180.31928 * 15 14 13 17 17 N 1.34779 * 119.99850 * 0.26641 * 16 15 14 18 18 O 1.21508 * 120.00110 * 180.26847 * 16 15 14 19 19 C 1.39027 * 120.62005 * 0.58862 * 15 14 13 20 20 H 0.96999 * 120.00508 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46579 * 60.00268 * 9 7 2 22 22 H 1.09003 * 109.47164 * 300.00833 * 9 7 2 23 23 H 0.96998 * 120.00456 * 0.02562 * 10 9 7 24 24 H 1.08001 * 120.36826 * 359.97438 * 12 11 10 25 25 H 1.08001 * 119.50079 * 179.97438 * 13 12 11 26 26 H 0.96996 * 120.00164 * 359.97438 * 17 16 15 27 27 H 0.97000 * 119.99873 * 180.02562 * 17 16 15 28 28 H 1.08002 * 120.52341 * 179.70876 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7392 -4.9249 -0.0015 12 6 0.3724 -5.1996 0.0006 13 6 -0.0525 -6.5150 0.0013 14 7 0.8131 -7.5070 0.0007 15 6 2.1240 -7.2928 -0.0066 16 6 3.0559 -8.4450 -0.0141 17 7 2.5721 -9.7029 -0.0189 18 8 4.2561 -8.2556 -0.0159 19 6 2.6300 -5.9979 -0.0017 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 3.1568 -3.4354 -0.0021 24 1 -0.3465 -4.3936 0.0023 25 1 -1.1104 -6.7322 0.0033 26 1 1.6140 -9.8541 -0.0171 27 1 3.1821 -10.4571 -0.0235 28 1 3.6962 -5.8256 -0.0029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306923844.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:32 Heat of formation + Delta-G solvation = -13.901940 kcal Electronic energy + Delta-G solvation = -13944.434035 eV Core-core repulsion = 11380.656087 eV Total energy + Delta-G solvation = -2563.777948 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16877 -38.56618 -35.78680 -33.59537 -32.88454 -30.94907 -30.10787 -26.84594 -24.53478 -22.71127 -22.40037 -20.16663 -18.12664 -17.33807 -16.52308 -15.94734 -15.24442 -15.15088 -14.84634 -14.62325 -13.85738 -13.58661 -13.43904 -13.26845 -12.57273 -12.24542 -11.30500 -11.06782 -11.03256 -10.34050 -10.22574 -10.21638 -9.65074 -9.56026 -9.23997 -8.84894 -8.69410 -7.10757 -6.31745 -4.38056 1.08460 1.89272 3.04337 3.18731 3.23629 3.25378 3.51837 4.11321 4.32935 4.34249 4.55411 5.05940 5.12684 5.45460 5.59809 5.83153 6.01506 6.18778 6.51389 6.74036 6.85629 7.04142 7.23057 7.37793 7.47960 7.78436 7.99404 8.15815 8.40640 8.41104 8.71846 9.28944 10.78649 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.058609 B = 0.005412 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.625856 B = 5172.101977 C = 5634.575305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.709 5.709 11 C 0.256 3.744 12 C -0.234 4.234 13 C 0.133 3.867 14 N -0.524 5.524 15 C 0.101 3.899 16 C 0.582 3.418 17 N -0.839 5.839 18 O -0.544 6.544 19 C -0.199 4.199 20 H 0.268 0.732 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.397 0.603 24 H 0.140 0.860 25 H 0.155 0.845 26 H 0.412 0.588 27 H 0.400 0.600 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -12.842 -0.018 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.126 3.874 10 N -0.331 5.331 11 C 0.137 3.863 12 C -0.260 4.260 13 C -0.024 4.024 14 N -0.241 5.241 15 C -0.035 4.035 16 C 0.366 3.634 17 N -0.402 5.402 18 O -0.420 6.420 19 C -0.227 4.227 20 H 0.078 0.922 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.232 0.768 24 H 0.157 0.843 25 H 0.172 0.828 26 H 0.242 0.758 27 H 0.230 0.770 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.319 -13.042 -0.015 13.046 hybrid contribution 0.737 1.597 0.000 1.759 sum 1.056 -11.445 -0.015 11.493 Atomic orbital electron populations 1.69917 1.06103 1.27710 1.48786 1.24922 0.94970 0.99543 0.94388 0.86429 0.79441 0.81989 0.78866 1.19971 1.20956 1.19968 1.21126 0.93435 0.90231 1.53501 0.91833 1.19253 0.88599 0.82467 0.97055 1.45587 1.10369 1.02220 1.74905 1.18197 0.92773 0.86121 0.89221 1.21871 0.94823 0.98872 1.10476 1.22292 0.98717 0.87700 0.93703 1.67448 1.01556 1.36586 1.18491 1.20457 0.90695 0.91928 1.00457 1.18033 0.87075 0.83228 0.75091 1.43628 1.12660 1.07015 1.76924 1.90793 1.15317 1.85631 1.50257 1.21452 1.00674 0.91261 1.09323 0.92236 0.95634 0.95632 0.76843 0.84265 0.82798 0.75811 0.77003 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.63 13.29 55.43 0.74 -23.89 15 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.54 -14.22 9.28 -34.44 -0.32 -14.53 15 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 15 9 C 0.25 5.92 4.70 -5.20 -0.02 5.90 15 10 N -0.71 -14.34 5.71 -59.66 -0.34 -14.68 15 11 C 0.26 4.75 6.69 -83.63 -0.56 4.19 15 12 C -0.23 -4.01 9.39 -39.14 -0.37 -4.38 15 13 C 0.13 1.97 11.17 -17.63 -0.20 1.77 15 14 N -0.52 -7.97 9.54 -9.89 -0.09 -8.06 15 15 C 0.10 1.66 6.74 -83.06 -0.56 1.10 15 16 C 0.58 8.90 8.08 -12.17 -0.10 8.80 15 17 N -0.84 -8.94 8.86 30.61 0.27 -8.67 15 18 O -0.54 -9.91 17.15 5.36 0.09 -9.82 15 19 C -0.20 -3.48 9.52 -38.83 -0.37 -3.85 15 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.03 0.66 7.99 -51.93 -0.42 0.24 15 22 H 0.03 0.66 7.99 -51.93 -0.41 0.24 15 23 H 0.40 7.54 8.35 -40.82 -0.34 7.20 15 24 H 0.14 2.44 6.88 -52.49 -0.36 2.08 15 25 H 0.15 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.41 3.79 8.16 -40.82 -0.33 3.45 15 27 H 0.40 3.33 8.93 -40.82 -0.36 2.96 15 28 H 0.14 2.34 7.64 -52.49 -0.40 1.94 15 LS Contribution 256.34 15.07 3.86 3.86 Total: -1.00 -29.60 256.34 -5.67 -35.28 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -2.59 Total: 10.01 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.59 Total: 0.64 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.57 Total: -55.31 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.60 -5.67 -35.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306923844.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.376 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds