Wall clock time and date at job start Sun Mar 29 2020 21:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47113 * 2 1 4 4 C 1.53003 * 109.46735 * 240.00368 * 2 1 3 5 5 C 1.50703 * 109.46890 * 174.99775 * 4 2 1 6 6 C 1.38654 * 120.78409 * 90.00032 * 5 4 2 7 7 C 1.38209 * 119.15786 * 180.02562 * 6 5 4 8 8 N 1.31870 * 120.76375 * 0.26353 * 7 6 5 9 9 C 1.31872 * 121.72489 * 359.46946 * 8 7 6 10 10 C 1.38200 * 120.76402 * 0.52682 * 9 8 7 11 11 N 1.46895 * 109.47056 * 120.00437 * 2 1 3 12 12 C 1.46901 * 111.00360 * 274.99517 * 11 2 1 13 13 C 1.50698 * 109.47242 * 180.02562 * 12 11 2 14 14 H 1.07999 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99816 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00013 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46997 * 89.99540 * 17 15 13 19 19 H 1.48501 * 109.47179 * 209.99556 * 17 15 13 20 20 H 1.48498 * 109.47204 * 329.99601 * 17 15 13 21 21 H 1.08998 * 109.47403 * 59.99160 * 1 2 3 22 22 H 1.08992 * 109.47223 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46829 * 299.99926 * 1 2 3 24 24 H 1.08996 * 109.46980 * 55.00471 * 4 2 1 25 25 H 1.08997 * 109.47418 * 295.00211 * 4 2 1 26 26 H 1.07995 * 120.42251 * 0.04566 * 6 5 4 27 27 H 1.08002 * 119.61346 * 179.97438 * 7 6 5 28 28 H 1.08004 * 119.61160 * 180.27376 * 9 8 7 29 29 H 1.08003 * 120.41583 * 179.72635 * 10 9 8 30 30 H 1.00902 * 111.00108 * 38.95372 * 11 2 1 31 31 H 1.08997 * 109.46924 * 300.00494 * 12 11 2 32 32 H 1.09006 * 109.46659 * 60.00479 * 12 11 2 33 33 H 0.97000 * 119.99975 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 6 4.3470 -1.5751 -0.7196 7 6 5.7207 -1.4441 -0.7979 8 7 6.2659 -0.4187 -1.4227 9 6 5.5313 0.5104 -2.0025 10 6 4.1513 0.4459 -1.9653 11 7 2.0197 -0.6926 1.1993 12 6 2.0826 0.2224 2.3469 13 6 2.5886 -0.5218 3.5556 14 1 2.8381 -1.5698 3.4792 15 6 2.7321 0.1349 4.7594 16 7 2.4278 1.4109 4.8526 17 14 3.3600 -0.7874 6.2575 18 1 4.8409 -0.6923 6.3125 19 1 2.7796 -0.1890 7.4865 20 1 2.9587 -2.2141 6.1646 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 1.6054 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2058 26 1 3.9064 -2.4150 -0.2031 27 1 6.3548 -2.1876 -0.3380 28 1 6.0138 1.3334 -2.5088 29 1 3.5552 1.2122 -2.4384 30 1 1.4495 -1.4980 1.4099 31 1 2.7590 1.0460 2.1182 32 1 1.0871 0.6161 2.5526 33 1 2.5284 1.8729 5.6996 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308665152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:58 Heat of formation + Delta-G solvation = -1.465323 kcal Electronic energy + Delta-G solvation = -14546.017393 eV Core-core repulsion = 12184.037743 eV Total energy + Delta-G solvation = -2361.979650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93890 -38.28225 -35.28136 -33.92973 -31.94669 -31.55185 -27.93178 -27.90074 -24.26331 -23.98532 -22.99951 -21.52554 -18.53924 -17.49608 -17.18787 -16.72200 -16.34679 -15.70447 -15.58078 -15.15358 -14.57507 -14.39481 -14.25784 -13.82725 -13.46552 -13.14836 -13.05977 -12.71140 -12.53491 -12.41068 -12.22906 -11.87741 -11.76002 -11.29994 -10.67286 -10.30915 -10.24058 -9.89915 -8.99912 -8.22792 -6.33211 0.38444 0.51359 1.39287 1.41160 1.51792 2.38756 3.02209 3.10868 3.58714 3.71839 3.85267 4.05141 4.19115 4.35488 4.41426 4.45444 4.49247 4.72872 4.83549 4.92074 4.95845 5.06437 5.06941 5.16744 5.23436 5.32465 5.40667 5.60507 5.67401 5.97829 6.04769 6.49468 6.77310 6.94655 7.16923 7.37900 8.88627 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024869 B = 0.007946 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.648569 B = 3523.067845 C = 4201.324132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.084 3.916 3 H 0.048 0.952 4 C -0.060 4.060 5 C -0.030 4.030 6 C -0.149 4.149 7 C 0.075 3.925 8 N -0.523 5.523 9 C 0.077 3.923 10 C -0.181 4.181 11 N -0.676 5.676 12 C 0.217 3.783 13 C -0.530 4.530 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.260 1.260 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.030 0.970 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.138 0.862 27 H 0.163 0.837 28 H 0.173 0.827 29 H 0.153 0.847 30 H 0.335 0.665 31 H -0.014 1.014 32 H -0.039 1.039 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -4.680 -13.674 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 H 0.066 0.934 4 C -0.098 4.098 5 C -0.038 4.038 6 C -0.169 4.169 7 C -0.081 4.081 8 N -0.233 5.233 9 C -0.080 4.080 10 C -0.201 4.201 11 N -0.307 5.307 12 C 0.089 3.911 13 C -0.569 4.569 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.184 1.184 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.050 0.950 24 H 0.119 0.881 25 H 0.105 0.895 26 H 0.156 0.844 27 H 0.181 0.819 28 H 0.190 0.810 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.004 0.996 32 H -0.021 1.021 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.702 -4.393 -13.752 14.454 hybrid contribution -1.460 0.160 1.457 2.068 sum -0.758 -4.233 -12.296 13.026 Atomic orbital electron populations 1.22389 0.95941 1.02722 1.01861 1.21549 0.93290 0.96908 0.90920 0.93368 1.20672 0.89364 1.02462 0.97279 1.20443 0.97209 0.93211 0.92928 1.22134 0.94547 1.01140 0.99038 1.22991 0.93707 0.95626 0.95761 1.67609 1.42148 1.03495 1.10009 1.23075 0.91468 0.97075 0.96351 1.22293 0.96368 0.99493 1.01937 1.60610 1.56232 1.09815 1.03999 1.19079 0.92501 0.91322 0.88192 1.21567 1.43410 0.97231 0.94656 0.91638 1.25940 0.95730 0.95767 1.02420 1.70093 1.49939 1.10730 1.26830 0.85387 0.78315 0.79027 0.77915 1.20278 1.20764 1.18417 0.90099 0.91150 0.95036 0.88125 0.89515 0.84411 0.81936 0.81011 0.82971 0.84713 0.99566 1.02097 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.66 9.16 71.98 0.66 -4.00 16 2 C 0.08 2.69 2.58 44.92 0.12 2.80 16 3 H 0.05 1.77 7.80 -2.39 -0.02 1.75 16 4 C -0.06 -1.47 5.07 29.85 0.15 -1.32 16 5 C -0.03 -0.86 4.98 -19.67 -0.10 -0.95 16 6 C -0.15 -4.56 9.47 22.36 0.21 -4.35 16 7 C 0.07 2.34 11.18 84.68 0.95 3.29 16 8 N -0.52 -17.14 10.36 -195.84 -2.03 -19.17 16 9 C 0.08 2.17 11.18 84.68 0.95 3.12 16 10 C -0.18 -4.84 9.82 22.36 0.22 -4.62 16 11 N -0.68 -27.26 5.66 -495.57 -2.80 -30.06 16 12 C 0.22 11.51 5.24 85.56 0.45 11.96 16 13 C -0.53 -30.15 9.32 25.60 0.24 -29.91 16 14 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 16 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 17 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 23 H 0.03 1.03 7.45 -2.38 -0.02 1.01 16 24 H 0.10 1.88 8.10 -2.39 -0.02 1.86 16 25 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 26 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 28 H 0.17 3.74 8.06 -2.91 -0.02 3.71 16 29 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.34 12.71 8.46 -89.69 -0.76 11.95 16 31 H -0.01 -0.83 8.05 -2.39 -0.02 -0.85 16 32 H -0.04 -2.20 7.44 -2.38 -0.02 -2.22 16 33 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -67.73 283.66 2.10 -65.63 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.32 Total: 17.39 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.30 Total: -23.56 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -4.55 Total: -106.20 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -67.73 2.10 -65.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308665152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.160 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds