Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48494 * 109.47227 * 274.97971 * 3 2 1 5 5 H 1.48491 * 109.47222 * 34.98341 * 3 2 1 6 6 H 1.48506 * 109.47094 * 154.98236 * 3 2 1 7 7 C 1.40055 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99931 * 186.13967 * 7 2 1 9 9 C 1.46371 * 119.99764 * 6.13558 * 7 2 1 10 10 O 1.21686 * 120.00470 * 353.89396 * 9 7 2 11 11 N 1.34777 * 119.99786 * 173.89262 * 9 7 2 12 12 C 1.47069 * 136.05685 * 180.02562 * 11 9 7 13 13 C 1.53500 * 88.04645 * 152.81198 * 12 11 9 14 14 O 1.42896 * 114.20987 * 272.50634 * 13 12 11 15 15 C 1.53005 * 114.20442 * 139.68391 * 13 12 11 16 16 F 1.39896 * 109.47178 * 180.02562 * 15 13 12 17 17 F 1.39904 * 109.46915 * 300.00105 * 15 13 12 18 18 C 1.47072 * 136.05874 * 359.95017 * 11 9 7 19 19 H 0.96991 * 119.99918 * 0.02562 * 1 2 3 20 20 H 1.08995 * 113.46909 * 267.62000 * 12 11 9 21 21 H 1.09001 * 113.46568 * 38.00885 * 12 11 9 22 22 H 0.96696 * 113.99918 * 179.97438 * 14 13 12 23 23 H 1.09000 * 109.47345 * 59.99855 * 15 13 12 24 24 H 1.09002 * 113.46512 * 321.93770 * 18 11 9 25 25 H 1.08993 * 113.46473 * 92.31624 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2155 0.1006 9 6 1.2814 -2.4769 -0.1344 10 8 0.0646 -2.4830 -0.1352 11 7 1.9611 -3.6342 -0.2577 12 6 1.6138 -5.0552 -0.4097 13 6 2.9526 -5.2506 -1.1348 14 8 2.8980 -5.0071 -2.5418 15 6 3.6804 -6.5461 -0.7699 16 9 4.8817 -6.6228 -1.4827 17 9 3.9515 -6.5579 0.6026 18 6 3.3765 -4.0317 -0.3007 19 1 -0.4849 0.8400 -0.0004 20 1 1.5511 -5.5905 0.5376 21 1 0.7462 -5.2241 -1.0475 22 1 3.7430 -5.1307 -2.9955 23 1 3.0519 -7.3998 -1.0235 24 1 4.0078 -3.3305 -0.8466 25 1 3.7837 -4.2932 0.6758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335542611.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = -143.246868 kcal Electronic energy + Delta-G solvation = -15318.602207 eV Core-core repulsion = 12162.693161 eV Total energy + Delta-G solvation = -3155.909046 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.065 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.07668 -47.08995 -39.55237 -36.38462 -34.68663 -32.51813 -29.41090 -26.86629 -25.62982 -24.78388 -20.82160 -19.14834 -18.15035 -17.42596 -17.22659 -16.67613 -15.69075 -15.10854 -14.52406 -14.00745 -13.92835 -13.83281 -13.43384 -13.34589 -13.06416 -12.21222 -12.10145 -11.75804 -11.50358 -11.08836 -10.99772 -10.75108 -10.33130 -10.15896 -9.78750 -8.90313 -7.74558 -7.40688 -6.26898 -4.70214 3.11852 3.18396 3.22392 3.49949 3.85411 3.98751 4.11382 4.16601 4.30721 4.57296 4.69332 5.04952 5.54720 5.68512 5.81595 6.02139 6.04255 6.28241 6.57535 7.38789 7.56554 8.02157 8.37867 8.95872 9.47220 10.49440 10.68635 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.007726 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.492741 B = 3623.460346 C = 3823.567015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.587 3.413 10 O -0.570 6.570 11 N -0.650 5.650 12 C 0.123 3.877 13 C 0.032 3.968 14 O -0.508 6.508 15 C 0.251 3.749 16 F -0.205 7.205 17 F -0.194 7.194 18 C 0.092 3.908 19 H 0.270 0.730 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.380 0.620 23 H 0.119 0.881 24 H 0.078 0.922 25 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -10.408 -2.021 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.395 3.605 10 O -0.452 6.452 11 N -0.391 5.391 12 C -0.002 4.002 13 C -0.012 4.012 14 O -0.314 6.314 15 C 0.196 3.804 16 F -0.187 7.187 17 F -0.175 7.175 18 C -0.034 4.034 19 H 0.081 0.919 20 H 0.101 0.899 21 H 0.098 0.902 22 H 0.228 0.772 23 H 0.136 0.864 24 H 0.096 0.904 25 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.320 -9.915 -1.835 12.460 hybrid contribution 1.301 0.549 -0.086 1.415 sum 8.622 -9.366 -1.921 12.874 Atomic orbital electron populations 1.70018 1.07141 1.27568 1.34841 1.25736 0.94675 1.00398 0.92534 0.86275 0.80176 0.81074 0.78786 1.19662 1.20307 1.18804 1.20770 0.94121 0.88766 1.53445 0.91281 1.18001 0.86331 0.80224 0.75913 1.90625 1.13688 1.84785 1.56121 1.49778 1.05431 1.04096 1.79837 1.22575 0.94071 0.86397 0.97169 1.23889 1.00432 0.92345 0.84551 1.86674 1.36854 1.91614 1.16214 1.22386 0.82610 1.01661 0.73730 1.92953 1.49960 1.97596 1.78165 1.92987 1.94609 1.97655 1.32275 1.23209 0.88565 0.93203 0.98389 0.91891 0.89916 0.90232 0.77181 0.86387 0.90368 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.28 11.85 55.55 0.66 -22.62 15 2 C 0.09 2.45 5.49 -17.36 -0.10 2.36 15 3 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 7 C -0.53 -15.54 9.37 -35.63 -0.33 -15.88 15 8 H 0.07 1.86 7.78 -52.48 -0.41 1.45 15 9 C 0.59 17.51 7.99 -12.99 -0.10 17.41 15 10 O -0.57 -19.23 15.82 5.20 0.08 -19.14 15 11 N -0.65 -15.49 3.69 -186.64 -0.69 -16.18 15 12 C 0.12 2.27 7.97 -8.50 -0.07 2.21 15 13 C 0.03 0.48 1.84 -90.01 -0.17 0.32 15 14 O -0.51 -7.86 13.56 -35.23 -0.48 -8.34 15 15 C 0.25 2.89 5.20 37.16 0.19 3.09 15 16 F -0.21 -2.40 16.63 2.25 0.04 -2.36 15 17 F -0.19 -2.51 15.74 2.25 0.04 -2.48 15 18 C 0.09 1.68 7.63 -8.41 -0.06 1.62 15 19 H 0.27 7.38 8.29 -40.82 -0.34 7.04 15 20 H 0.08 1.34 7.91 -51.93 -0.41 0.93 15 21 H 0.08 1.54 8.14 -51.93 -0.42 1.12 15 22 H 0.38 4.12 8.38 45.56 0.38 4.50 15 23 H 0.12 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 25 H 0.08 1.37 7.08 -51.93 -0.37 1.00 15 LS Contribution 237.53 15.07 3.58 3.58 Total: -1.00 -36.26 237.53 -3.64 -39.91 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -1.21 Total: 1.21 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -0.64 Total: 11.12 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.03 Total: -38.80 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.40 Total: -27.49 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.07 Total: -4.84 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -36.26 -3.64 -39.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335542611.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.340 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds