Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48494 * 109.47227 * 274.97971 * 3 2 1 5 5 H 1.48491 * 109.47222 * 34.98341 * 3 2 1 6 6 H 1.48506 * 109.47094 * 154.98236 * 3 2 1 7 7 C 1.40055 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99931 * 186.13967 * 7 2 1 9 9 C 1.46371 * 119.99764 * 6.13558 * 7 2 1 10 10 O 1.21686 * 120.00470 * 353.89396 * 9 7 2 11 11 N 1.34777 * 119.99786 * 173.89262 * 9 7 2 12 12 C 1.47069 * 136.05685 * 180.02562 * 11 9 7 13 13 C 1.53500 * 88.04645 * 152.81198 * 12 11 9 14 14 O 1.42896 * 114.20987 * 272.50634 * 13 12 11 15 15 C 1.53005 * 114.20442 * 139.68391 * 13 12 11 16 16 F 1.39896 * 109.47178 * 180.02562 * 15 13 12 17 17 F 1.39904 * 109.46915 * 300.00105 * 15 13 12 18 18 C 1.47072 * 136.05874 * 359.95017 * 11 9 7 19 19 H 0.96991 * 119.99918 * 0.02562 * 1 2 3 20 20 H 1.08995 * 113.46909 * 267.62000 * 12 11 9 21 21 H 1.09001 * 113.46568 * 38.00885 * 12 11 9 22 22 H 0.96696 * 113.99918 * 179.97438 * 14 13 12 23 23 H 1.09000 * 109.47345 * 59.99855 * 15 13 12 24 24 H 1.09002 * 113.46512 * 321.93770 * 18 11 9 25 25 H 1.08993 * 113.46473 * 92.31624 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0824 -1.2155 0.1006 9 6 1.2814 -2.4769 -0.1344 10 8 0.0646 -2.4830 -0.1352 11 7 1.9611 -3.6342 -0.2577 12 6 1.6138 -5.0552 -0.4097 13 6 2.9526 -5.2506 -1.1348 14 8 2.8980 -5.0071 -2.5418 15 6 3.6804 -6.5461 -0.7699 16 9 4.8817 -6.6228 -1.4827 17 9 3.9515 -6.5579 0.6026 18 6 3.3765 -4.0317 -0.3007 19 1 -0.4849 0.8400 -0.0004 20 1 1.5511 -5.5905 0.5376 21 1 0.7462 -5.2241 -1.0475 22 1 3.7430 -5.1307 -2.9955 23 1 3.0519 -7.3998 -1.0235 24 1 4.0078 -3.3305 -0.8466 25 1 3.7837 -4.2932 0.6758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335542611.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = -173.571603 kcal Electronic energy + Delta-G solvation = -15319.917186 eV Core-core repulsion = 12162.693161 eV Total energy + Delta-G solvation = -3157.224025 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.065 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.03415 -48.04306 -41.09863 -38.38657 -36.22653 -34.70266 -31.00439 -28.70823 -27.12559 -26.43838 -22.31710 -20.86169 -19.47588 -18.51860 -18.38738 -18.20056 -17.71058 -16.60979 -16.22287 -15.72592 -15.23708 -15.18689 -14.68941 -14.45340 -14.35212 -14.01513 -13.76300 -13.25997 -13.06593 -12.87402 -12.76579 -12.59806 -12.03040 -11.73102 -11.12774 -10.99576 -9.98421 -9.31112 -8.38481 -6.93989 1.36531 1.38306 1.54800 2.12700 2.33177 2.35523 2.52750 2.83943 3.00639 3.23804 3.51910 3.56284 4.06178 4.33870 4.40138 4.47670 4.55532 4.81050 4.98192 5.24357 5.87736 6.32499 6.58144 6.78206 7.44801 8.33359 8.58255 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.047009 B = 0.007726 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.492741 B = 3623.460346 C = 3823.567015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.565 4.565 8 H 0.083 0.917 9 C 0.567 3.433 10 O -0.630 6.630 11 N -0.675 5.675 12 C 0.113 3.887 13 C 0.058 3.942 14 O -0.527 6.527 15 C 0.267 3.733 16 F -0.202 7.202 17 F -0.200 7.200 18 C 0.084 3.916 19 H 0.278 0.722 20 H 0.110 0.890 21 H 0.064 0.936 22 H 0.401 0.599 23 H 0.164 0.836 24 H 0.075 0.925 25 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.172 -10.936 -2.214 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.171 1.171 7 C -0.601 4.601 8 H 0.101 0.899 9 C 0.375 3.625 10 O -0.517 6.517 11 N -0.414 5.414 12 C -0.011 4.011 13 C 0.014 3.986 14 O -0.336 6.336 15 C 0.213 3.787 16 F -0.183 7.183 17 F -0.181 7.181 18 C -0.040 4.040 19 H 0.088 0.912 20 H 0.128 0.872 21 H 0.083 0.917 22 H 0.253 0.747 23 H 0.181 0.819 24 H 0.094 0.906 25 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.637 -10.516 -2.042 14.409 hybrid contribution 0.635 0.608 -0.048 0.880 sum 10.272 -9.909 -2.089 14.424 Atomic orbital electron populations 1.70178 1.09643 1.29336 1.35854 1.27059 0.95602 1.05049 0.91007 0.84928 0.78841 0.74644 0.79387 1.18574 1.19213 1.17132 1.21277 0.94951 0.89698 1.54140 0.89893 1.18302 0.86000 0.82380 0.75790 1.90555 1.15994 1.86509 1.58689 1.49502 1.08451 1.05008 1.78398 1.22890 0.95629 0.83630 0.98917 1.23452 0.97933 0.93164 0.84018 1.86639 1.38832 1.91827 1.16284 1.22333 0.82783 1.00373 0.73223 1.92971 1.49849 1.97439 1.78050 1.92987 1.94663 1.97547 1.32919 1.23526 0.85679 0.94594 1.00173 0.91213 0.87225 0.91728 0.74742 0.81868 0.90607 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.42 11.85 21.84 0.26 -51.16 15 2 C 0.03 1.61 5.49 85.31 0.47 2.08 15 3 Si 1.00 41.67 29.56 68.60 2.03 43.70 15 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 15 6 H -0.25 -9.55 7.11 99.48 0.71 -8.85 15 7 C -0.56 -33.49 9.37 24.83 0.23 -33.25 15 8 H 0.08 4.48 7.78 -2.91 -0.02 4.46 15 9 C 0.57 35.03 7.99 86.36 0.69 35.72 15 10 O -0.63 -44.62 15.82 -4.31 -0.07 -44.69 15 11 N -0.67 -32.51 3.69 -863.03 -3.18 -35.70 15 12 C 0.11 4.11 7.97 83.18 0.66 4.77 15 13 C 0.06 1.64 1.84 -10.40 -0.02 1.62 15 14 O -0.53 -15.27 13.56 -148.98 -2.02 -17.29 15 15 C 0.27 5.09 5.20 71.98 0.37 5.47 15 16 F -0.20 -3.90 16.63 44.97 0.75 -3.15 15 17 F -0.20 -4.45 15.74 44.97 0.71 -3.74 15 18 C 0.08 2.98 7.63 83.24 0.64 3.62 15 19 H 0.28 15.59 8.29 -92.71 -0.77 14.82 15 20 H 0.11 3.37 7.91 -2.39 -0.02 3.35 15 21 H 0.06 2.52 8.14 -2.39 -0.02 2.50 15 22 H 0.40 7.61 8.38 -74.06 -0.62 6.99 15 23 H 0.16 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 25 H 0.10 3.14 7.08 -2.39 -0.02 3.12 15 Total: -1.00 -82.69 237.53 2.13 -80.56 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.61 Total: 11.43 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 3.04 Total: 20.02 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.93 Total: -86.85 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -2.09 Total: -61.98 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 1.46 Total: -6.89 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -82.69 2.13 -80.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335542611.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.007 kcal (2) G-P(sol) polarization free energy of solvation -82.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds