Wall clock time and date at job start Sun Mar 29 2020 21:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.62033 * 2 1 4 4 C 1.38627 * 119.16050 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.78770 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47025 * 269.97658 * 5 4 3 7 7 C 1.46905 * 110.99973 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46516 * 324.99659 * 7 6 5 9 9 C 1.52995 * 109.47365 * 84.99971 * 7 6 5 10 10 C 1.50698 * 109.46973 * 205.00242 * 7 6 5 11 11 H 1.08002 * 120.00031 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00212 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99663 * 359.97438 * 12 10 7 14 14 Si 1.86791 * 120.00424 * 179.97438 * 12 10 7 15 15 H 1.48507 * 109.46954 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47350 * 119.99707 * 14 12 10 17 17 H 1.48501 * 109.47456 * 239.99959 * 14 12 10 18 18 C 1.38678 * 118.42399 * 0.02562 * 4 3 2 19 19 C 1.38176 * 119.15893 * 0.02562 * 18 4 3 20 20 N 1.31860 * 119.61682 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47210 * 269.97459 * 1 2 3 22 22 H 1.08999 * 109.47009 * 29.97609 * 1 2 3 23 23 H 1.09003 * 109.47109 * 149.97057 * 1 2 3 24 24 H 1.08000 * 120.42111 * 0.02562 * 3 2 1 25 25 H 1.08993 * 109.47285 * 29.98355 * 5 4 3 26 26 H 1.09009 * 109.46770 * 149.97741 * 5 4 3 27 27 H 1.00906 * 111.00208 * 303.95141 * 6 5 4 28 28 H 1.08999 * 109.47105 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.47012 * 299.99807 * 9 7 6 30 30 H 1.08993 * 109.47244 * 59.99927 * 9 7 6 31 31 H 0.96996 * 119.99850 * 180.02562 * 13 12 10 32 32 H 1.07994 * 120.41608 * 180.02562 * 18 4 3 33 33 H 1.07995 * 119.61795 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.3582 2.4789 0.0000 6 7 4.6121 2.8981 -1.3848 7 6 5.3744 4.1533 -1.4234 8 1 5.0708 4.7884 -0.5912 9 6 6.8690 3.8460 -1.3118 10 6 5.1037 4.8655 -2.7236 11 1 4.4329 4.4292 -3.4489 12 6 5.7125 6.0742 -2.9874 13 7 6.5290 6.6058 -2.1040 14 14 5.3776 6.9567 -4.5992 15 1 4.4305 6.1548 -5.4151 16 1 4.7855 8.2896 -4.3201 17 1 6.6508 7.1268 -5.3444 18 6 4.2267 -0.0344 -0.0016 19 6 3.4766 -1.1949 -0.0026 20 7 2.1587 -1.1463 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8897 -0.5143 24 1 1.6509 2.1373 0.0004 25 1 3.7859 3.2509 0.5143 26 1 5.3076 2.3275 0.5138 27 1 5.0854 2.1720 -1.9015 28 1 7.4345 4.7774 -1.3400 29 1 7.0647 3.3309 -0.3713 30 1 7.1725 3.2109 -2.1439 31 1 6.9570 7.4562 -2.2893 32 1 5.3057 -0.0806 -0.0016 33 1 3.9754 -2.1527 -0.0031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391157437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:03 Heat of formation + Delta-G solvation = 4.762659 kcal Electronic energy + Delta-G solvation = -14293.116459 eV Core-core repulsion = 11931.406874 eV Total energy + Delta-G solvation = -2361.709585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17753 -37.99233 -35.20586 -33.69348 -33.25528 -30.16341 -28.48196 -27.28040 -26.21013 -23.94881 -22.22961 -21.75491 -18.49112 -17.50019 -17.19502 -16.76558 -16.29860 -15.86769 -15.28518 -15.08932 -14.78802 -14.20174 -13.80540 -13.63154 -13.33590 -13.14542 -13.02498 -12.86418 -12.74749 -12.48962 -12.24554 -12.15537 -11.93374 -11.09328 -10.55024 -10.50047 -10.40293 -9.81247 -9.03499 -8.11186 -6.22252 0.22437 0.31162 1.41707 1.43876 1.55948 2.43528 2.83640 3.17526 3.46840 3.59390 3.76875 3.98033 4.21965 4.24449 4.42063 4.60783 4.67619 4.71199 4.79417 4.81654 4.86667 4.91079 5.06367 5.17814 5.23846 5.36281 5.49491 5.68342 5.78864 5.84434 6.24295 6.58520 6.74158 6.91462 7.06635 7.47770 8.94530 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.041550 B = 0.005846 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.722515 B = 4788.625322 C = 5175.751352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.112 3.888 3 C -0.164 4.164 4 C -0.036 4.036 5 C 0.099 3.901 6 N -0.680 5.680 7 C 0.215 3.785 8 H 0.006 0.994 9 C -0.157 4.157 10 C -0.515 4.515 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.922 5.922 14 Si 0.960 3.040 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.179 4.179 19 C 0.097 3.903 20 N -0.511 5.511 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.137 0.863 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.332 0.668 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.146 0.854 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -11.990 4.842 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.024 4.024 3 C -0.185 4.185 4 C -0.044 4.044 5 C -0.030 4.030 6 N -0.310 5.310 7 C 0.107 3.893 8 H 0.024 0.976 9 C -0.216 4.216 10 C -0.554 4.554 11 H 0.071 0.929 12 C -0.188 4.188 13 N -0.562 5.562 14 Si 0.786 3.214 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.205 1.205 18 C -0.199 4.199 19 C -0.059 4.059 20 N -0.222 5.222 21 H 0.108 0.892 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.155 0.845 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.149 0.851 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.380 -12.277 4.803 15.108 hybrid contribution 1.602 1.317 -0.428 2.118 sum -5.778 -10.960 4.375 13.139 Atomic orbital electron populations 1.20759 0.86921 1.04052 1.03932 1.21720 0.98428 0.87908 0.94393 1.22007 0.94334 0.99839 1.02291 1.20388 0.94397 0.95159 0.94446 1.20851 0.97463 0.93130 0.91533 1.60732 1.53119 1.06094 1.11059 1.18980 0.88299 0.86371 0.95660 0.97632 1.22240 1.01023 1.01081 0.97294 1.21453 1.25986 1.04766 1.03164 0.92893 1.25696 0.94992 0.98002 1.00153 1.70008 1.30950 1.18964 1.36293 0.85470 0.77905 0.78219 0.79779 1.19486 1.20673 1.20543 1.22238 1.02273 0.92614 1.02808 1.23114 0.89169 0.99218 0.94421 1.67552 1.10799 1.29769 1.14077 0.89197 0.89640 0.90341 0.84521 0.91260 0.94300 0.85110 0.91893 0.95323 0.94855 0.92946 0.83579 0.80054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 10.17 71.24 0.72 -1.21 16 2 C 0.11 3.00 6.78 42.55 0.29 3.29 16 3 C -0.16 -4.76 9.45 22.36 0.21 -4.54 16 4 C -0.04 -1.08 5.43 -19.67 -0.11 -1.18 16 5 C 0.10 3.44 5.66 85.56 0.48 3.93 16 6 N -0.68 -28.39 6.22 -499.45 -3.11 -31.49 16 7 C 0.22 10.75 2.57 44.17 0.11 10.86 16 8 H 0.01 0.32 7.80 -2.39 -0.02 0.30 16 9 C -0.16 -7.39 8.94 71.98 0.64 -6.74 16 10 C -0.52 -28.53 8.84 25.60 0.23 -28.31 16 11 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 12 C 0.01 0.54 5.30 84.65 0.45 0.99 16 13 N -0.92 -52.69 11.32 21.45 0.24 -52.45 16 14 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 C -0.18 -4.66 9.82 22.36 0.22 -4.44 16 19 C 0.10 2.38 11.18 84.67 0.95 3.32 16 20 N -0.51 -14.14 10.27 -183.89 -1.89 -16.03 16 21 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 22 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 23 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 25 H 0.07 2.49 8.02 -2.39 -0.02 2.47 16 26 H 0.04 1.30 7.40 -2.38 -0.02 1.28 16 27 H 0.33 13.20 8.46 -89.69 -0.76 12.44 16 28 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 29 H 0.03 1.17 7.45 -2.39 -0.02 1.15 16 30 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 33 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -61.77 280.81 1.81 -59.96 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.33 Total: 18.17 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.20 Total: -24.03 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -4.75 Total: -99.97 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.77 1.81 -59.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391157437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.726 kcal (2) G-P(sol) polarization free energy of solvation -61.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds