Wall clock time and date at job start Sun Mar 29 2020 21:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47303 * 2 1 4 4 C 1.36932 * 119.99723 * 272.54719 * 3 2 1 5 5 H 1.08007 * 119.99890 * 177.06529 * 4 3 2 6 6 C 1.38809 * 120.00582 * 357.06077 * 4 3 2 7 7 N 1.31611 * 119.99691 * 29.45092 * 6 4 3 8 8 Si 1.86798 * 120.00205 * 209.45806 * 6 4 3 9 9 H 1.48499 * 109.47361 * 84.98798 * 8 6 4 10 10 H 1.48498 * 109.47092 * 204.98655 * 8 6 4 11 11 H 1.48504 * 109.47223 * 324.98944 * 8 6 4 12 12 C 1.46501 * 120.00079 * 92.54406 * 3 2 1 13 13 C 1.50704 * 109.47190 * 270.00185 * 12 3 2 14 14 C 1.38667 * 120.79099 * 89.99550 * 13 12 3 15 15 C 1.38181 * 119.16489 * 179.97438 * 14 13 12 16 16 N 1.31879 * 120.76333 * 0.02562 * 15 14 13 17 17 C 1.31852 * 121.72773 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.62001 * 179.97438 * 17 16 15 19 19 C 1.38225 * 120.76414 * 359.97438 * 17 16 15 20 20 H 1.08999 * 109.47312 * 60.00422 * 1 2 3 21 21 H 1.09002 * 109.47320 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47170 * 299.99975 * 1 2 3 23 23 H 1.09001 * 109.46818 * 239.99546 * 2 1 3 24 24 H 1.09002 * 109.46624 * 120.00182 * 2 1 3 25 25 H 0.97007 * 120.00186 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47207 * 150.00105 * 12 3 2 27 27 H 1.09001 * 109.47124 * 29.99897 * 12 3 2 28 28 H 1.08002 * 120.41722 * 0.02562 * 14 13 12 29 29 H 1.08001 * 119.61459 * 180.02562 * 15 14 13 30 30 H 1.09007 * 109.47245 * 89.99594 * 18 17 16 31 31 H 1.08999 * 109.47502 * 209.99833 * 18 17 16 32 32 H 1.09000 * 109.47138 * 330.00234 * 18 17 16 33 33 H 1.07995 * 120.42061 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1969 2.0442 -1.1847 5 1 2.5115 3.0774 -1.1832 6 6 1.9737 1.3884 -2.3877 7 7 1.0903 0.4150 -2.4524 8 14 2.9274 1.8874 -3.9144 9 1 4.2335 1.1811 -3.9351 10 1 2.1486 1.5235 -5.1253 11 1 3.1582 3.3543 -3.8965 12 6 2.3157 2.0530 1.2675 13 6 1.0793 2.7565 1.7652 14 6 0.1780 2.1065 2.5946 15 6 -0.9443 2.7838 3.0316 16 7 -1.1626 4.0326 2.6684 17 6 -0.3276 4.6818 1.8811 18 6 -0.6241 6.1081 1.4953 19 6 0.8167 4.0693 1.4056 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.9345 -0.0435 -3.2930 26 1 3.1117 2.7818 1.1145 27 1 2.6350 1.3153 2.0036 28 1 0.3515 1.0839 2.8959 29 1 -1.6509 2.2846 3.6781 30 1 -0.1767 6.7826 2.2254 31 1 -0.2072 6.3120 0.5091 32 1 -1.7031 6.2615 1.4725 33 1 1.4966 4.6062 0.7608 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527532741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:18 Heat of formation + Delta-G solvation = 41.384699 kcal Electronic energy + Delta-G solvation = -15092.532507 eV Core-core repulsion = 12732.410973 eV Total energy + Delta-G solvation = -2360.121534 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05946 -37.99578 -34.56485 -33.46810 -32.60667 -31.06089 -28.40114 -27.70180 -25.20310 -23.89431 -22.60884 -21.50346 -18.64622 -17.29358 -17.13517 -16.87874 -16.15081 -15.63799 -15.26577 -15.07422 -14.49141 -14.09406 -13.79166 -13.48023 -13.27240 -13.18701 -13.05218 -12.73994 -12.64203 -12.35116 -12.18164 -11.82575 -11.71163 -11.36620 -10.51183 -10.31236 -10.14996 -9.68262 -8.93448 -7.84729 -5.08132 0.33392 0.48563 1.47769 1.52647 1.57589 2.53473 2.95395 3.23564 3.53799 3.79539 3.90549 4.04177 4.33047 4.37768 4.55772 4.70851 4.73071 4.76757 4.80783 4.94214 4.99714 5.08389 5.20607 5.21508 5.25399 5.35950 5.62294 5.65863 5.83373 5.96681 6.16137 6.32373 7.15351 7.19834 7.90449 8.30005 9.17200 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.030189 B = 0.009541 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.267272 B = 2934.105606 C = 3406.156191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.601 5.601 4 C -0.257 4.257 5 H 0.076 0.924 6 C -0.046 4.046 7 N -0.909 5.909 8 Si 0.948 3.052 9 H -0.289 1.289 10 H -0.302 1.302 11 H -0.275 1.275 12 C 0.180 3.820 13 C -0.052 4.052 14 C -0.175 4.175 15 C 0.087 3.913 16 N -0.517 5.517 17 C 0.105 3.895 18 C -0.096 4.096 19 C -0.173 4.173 20 H 0.048 0.952 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.245 0.755 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.139 0.861 29 H 0.175 0.825 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 4.750 9.071 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.322 5.322 4 C -0.386 4.386 5 H 0.094 0.906 6 C -0.241 4.241 7 N -0.556 5.556 8 Si 0.777 3.223 9 H -0.217 1.217 10 H -0.230 1.230 11 H -0.200 1.200 12 C 0.053 3.947 13 C -0.063 4.063 14 C -0.195 4.195 15 C -0.069 4.069 16 N -0.229 5.229 17 C -0.032 4.032 18 C -0.153 4.153 19 C -0.193 4.193 20 H 0.067 0.933 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.192 0.808 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.091 5.072 9.210 10.570 hybrid contribution 0.867 -0.468 -1.457 1.759 sum -0.224 4.604 7.753 9.019 Atomic orbital electron populations 1.22174 0.99066 0.98394 0.99908 1.20911 0.92686 0.84292 0.98014 1.44565 1.75874 1.10789 1.00925 1.19459 1.38456 0.96376 0.84292 0.90620 1.25316 0.99541 0.99525 0.99717 1.70417 1.31633 1.28333 1.25213 0.85559 0.79060 0.77868 0.79767 1.21655 1.22960 1.19971 1.20035 0.91809 0.95464 0.87349 1.21659 0.99270 0.93586 0.91771 1.22079 0.96116 1.01437 0.99899 1.23022 0.95940 0.90325 0.97604 1.67489 1.31161 1.10285 1.13940 1.21678 0.90428 0.97976 0.93126 1.20706 1.03213 0.89062 1.02317 1.21921 0.99396 0.96040 1.01978 0.93306 0.95194 0.95199 0.92262 0.95072 0.94497 0.91786 0.90857 0.84280 0.80757 0.88976 0.90255 0.90693 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.28 9.68 71.98 0.70 -5.59 16 2 C 0.17 7.73 5.71 86.38 0.49 8.23 16 3 N -0.60 -28.25 2.52 -706.34 -1.78 -30.03 16 4 C -0.26 -13.40 9.68 84.03 0.81 -12.58 16 5 H 0.08 3.88 7.98 -2.91 -0.02 3.85 16 6 C -0.05 -2.46 4.98 84.86 0.42 -2.04 16 7 N -0.91 -50.99 8.35 21.65 0.18 -50.80 16 8 Si 0.95 43.92 29.64 68.60 2.03 45.96 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 10 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.18 6.84 5.88 85.63 0.50 7.34 16 13 C -0.05 -1.90 5.44 -19.67 -0.11 -2.00 16 14 C -0.17 -5.79 7.81 22.36 0.17 -5.62 16 15 C 0.09 2.77 11.18 84.67 0.95 3.71 16 16 N -0.52 -17.92 10.27 -183.89 -1.89 -19.81 16 17 C 0.10 3.54 6.78 42.55 0.29 3.83 16 18 C -0.10 -2.45 10.17 71.24 0.72 -1.72 16 19 C -0.17 -6.22 9.45 22.36 0.21 -6.01 16 20 H 0.05 2.65 6.30 -2.39 -0.02 2.63 16 21 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 22 H 0.03 1.26 5.68 -2.39 -0.01 1.25 16 23 H 0.06 3.15 5.81 -2.39 -0.01 3.13 16 24 H 0.03 1.27 7.86 -2.39 -0.02 1.25 16 25 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 26 H 0.06 2.34 8.00 -2.39 -0.02 2.32 16 27 H 0.07 2.46 7.83 -2.39 -0.02 2.44 16 28 H 0.14 4.11 7.88 -2.91 -0.02 4.09 16 29 H 0.18 4.29 8.06 -2.91 -0.02 4.26 16 30 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -60.44 273.16 4.80 -55.64 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.08 Total: 11.50 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 5.17 Total: -12.45 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -3.49 Total: -100.64 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.44 4.80 -55.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527532741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.025 kcal (2) G-P(sol) polarization free energy of solvation -60.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds