Wall clock time and date at job start Sun Mar 29 2020 21:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47399 * 2 1 4 4 C 1.34661 * 119.35951 * 85.00032 * 3 2 1 5 5 C 1.46869 * 118.53633 * 179.97438 * 4 3 2 6 6 N 1.32192 * 121.20965 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99905 * 173.94515 * 6 5 4 8 8 C 1.52997 * 109.47277 * 114.45597 * 7 6 5 9 9 C 1.50693 * 109.47443 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00190 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00187 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99918 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00186 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47087 * 59.99405 * 13 11 9 15 15 H 1.48496 * 109.47093 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46673 * 299.99297 * 13 11 9 17 17 C 1.46864 * 117.57613 * 0.02562 * 5 4 3 18 18 C 1.34661 * 118.53518 * 0.02562 * 17 5 4 19 19 N 1.35902 * 121.27560 * 359.74209 * 18 17 5 20 20 H 0.96999 * 118.60169 * 180.27866 * 19 18 17 21 21 H 1.09007 * 109.47129 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46830 * 299.99504 * 1 2 3 23 23 H 1.08995 * 109.47533 * 59.99791 * 1 2 3 24 24 H 1.08996 * 109.47378 * 120.00977 * 2 1 3 25 25 H 1.09007 * 109.46983 * 240.00269 * 2 1 3 26 26 H 1.08004 * 120.73394 * 359.95886 * 4 3 2 27 27 H 1.08994 * 109.47408 * 234.46128 * 7 6 5 28 28 H 1.09004 * 109.47146 * 354.45597 * 7 6 5 29 29 H 1.09008 * 109.47231 * 300.00574 * 8 7 6 30 30 H 1.09004 * 109.47033 * 59.99930 * 8 7 6 31 31 H 0.97003 * 120.00015 * 180.02562 * 12 11 9 32 32 H 1.08001 * 120.73203 * 180.02562 * 17 5 4 33 33 H 1.08004 * 119.35890 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1560 2.0773 1.1692 5 6 2.6479 3.4610 1.1482 6 7 2.7891 4.1548 2.2646 7 6 3.4054 5.4834 2.2283 8 6 2.3677 6.5377 2.6187 9 6 3.0015 7.9044 2.5808 10 1 4.0406 8.0104 2.3062 11 6 2.2550 9.0195 2.8978 12 7 0.9898 8.8904 3.2327 13 14 3.0408 10.7136 2.8515 14 1 3.5368 10.9919 1.4797 15 1 2.0336 11.7369 3.2303 16 1 4.1765 10.7587 3.8073 17 6 2.9760 4.0462 -0.1582 18 6 2.8103 3.2915 -1.2611 19 7 2.3553 2.0135 -1.1796 20 1 2.2543 1.5034 -1.9984 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5140 0.8898 25 1 1.8933 -0.5138 -0.8901 26 1 1.8990 1.5970 2.1018 27 1 4.2388 5.5166 2.9299 28 1 3.7698 5.6875 1.2215 29 1 1.5342 6.5045 1.9170 30 1 2.0034 6.3336 3.6255 31 1 0.4646 9.6750 3.4553 32 1 3.3421 5.0595 -0.2328 33 1 3.0471 3.7086 -2.2287 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590696889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:30 Heat of formation + Delta-G solvation = 33.813893 kcal Electronic energy + Delta-G solvation = -14056.703619 eV Core-core repulsion = 11696.253791 eV Total energy + Delta-G solvation = -2360.449829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87367 -35.66853 -34.13928 -32.99101 -30.83201 -29.86395 -28.30074 -24.92279 -23.81651 -22.39569 -21.22131 -19.48362 -18.23861 -16.36957 -16.14117 -15.26382 -14.58934 -14.42244 -14.25803 -14.08735 -13.74460 -12.76089 -12.57723 -12.25783 -12.13640 -11.98756 -11.44059 -11.35155 -11.12791 -10.90362 -10.73177 -10.31213 -9.83693 -9.27112 -9.18116 -9.10251 -8.30283 -8.11160 -6.65826 -5.90152 -3.93451 1.83306 1.94489 3.25744 3.38569 3.42219 3.45106 4.10956 4.42441 4.52935 4.75167 4.95029 5.06013 5.21249 5.43022 5.44349 5.55376 5.67806 5.68390 5.73173 5.99142 6.10936 6.41831 6.50782 6.55766 6.83791 7.10474 7.20369 7.38122 7.51817 7.80827 7.97142 8.12733 8.51200 8.90465 9.14380 9.69487 11.20898 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.052001 B = 0.005054 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.321843 B = 5538.432491 C = 5700.451510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 C 0.123 3.877 4 C -0.177 4.177 5 C 0.201 3.799 6 N -0.543 5.543 7 C 0.045 3.955 8 C 0.033 3.967 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.241 4.241 18 C 0.103 3.897 19 N -0.622 5.622 20 H 0.403 0.597 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.137 0.863 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.012 0.988 30 H 0.022 0.978 31 H 0.260 0.740 32 H 0.143 0.857 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -18.104 -11.755 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C 0.016 3.984 4 C -0.204 4.204 5 C 0.020 3.980 6 N -0.256 5.256 7 C -0.084 4.084 8 C -0.004 4.004 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.269 4.269 18 C -0.022 4.022 19 N -0.232 5.232 20 H 0.237 0.763 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.155 0.845 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.870 -17.846 -10.589 20.769 hybrid contribution 0.552 1.382 -1.123 1.864 sum 1.421 -16.464 -11.711 20.255 Atomic orbital electron populations 1.21791 0.93989 1.01988 1.02969 1.20633 0.96813 0.90866 1.03721 1.19754 0.98159 0.94494 0.85975 1.21255 1.09233 0.93653 0.96224 1.21402 0.94786 0.92742 0.89100 1.72965 1.16650 1.09682 1.26263 1.22435 0.98510 0.88415 0.99025 1.19036 0.93233 0.90956 0.97217 1.21199 0.96921 0.91655 1.46182 0.92774 1.25018 0.94846 0.99145 0.95371 1.69983 1.07125 1.29727 1.46526 0.86644 0.78982 0.83849 0.78424 1.20304 1.21279 1.20198 1.22701 1.09884 1.01519 0.92795 1.21206 0.97195 0.84156 0.99666 1.40639 1.62105 1.12594 1.07900 0.76338 0.92063 0.91603 0.92632 0.89205 0.90998 0.84544 0.91725 0.95083 0.96999 0.96004 0.93004 0.83996 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.08 -0.60 6.09 -27.89 -0.17 -0.77 16 3 C 0.12 1.38 6.06 -82.06 -0.50 0.88 16 4 C -0.18 -2.73 9.89 -37.36 -0.37 -3.10 16 5 C 0.20 3.94 6.97 -80.73 -0.56 3.38 16 6 N -0.54 -12.79 10.65 -55.80 -0.59 -13.38 16 7 C 0.05 1.13 6.18 -4.04 -0.02 1.11 16 8 C 0.03 0.97 5.30 -27.89 -0.15 0.83 16 9 C -0.52 -15.84 9.11 -34.44 -0.31 -16.15 16 10 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -28.48 13.29 55.43 0.74 -27.74 16 13 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 C -0.24 -4.08 9.40 -37.36 -0.35 -4.43 16 18 C 0.10 1.22 11.13 -17.02 -0.19 1.03 16 19 N -0.62 -6.09 5.22 -9.40 -0.05 -6.14 16 20 H 0.40 2.37 8.66 -40.82 -0.35 2.02 16 21 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 25 H 0.07 0.37 8.06 -51.93 -0.42 -0.05 16 26 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 27 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.03 0.73 5.36 -51.93 -0.28 0.45 16 29 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.14 2.57 6.06 -52.49 -0.32 2.25 16 33 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 LS Contribution 282.74 15.07 4.26 4.26 Total: -1.00 -36.33 282.74 -7.73 -44.07 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.71 Total: -2.29 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -2.36 Total: -16.30 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.09 Total: -47.27 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -36.33 -7.73 -44.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590696889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.882 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds