Wall clock time and date at job start Sun Mar 29 2020 21:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.42100 * 2 1 4 4 N 1.31860 * 120.76284 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72590 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.76784 * 0.02562 * 5 4 3 7 7 C 1.38627 * 120.41849 * 179.97438 * 2 1 3 8 8 C 1.50705 * 120.78771 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47209 * 85.02240 * 8 7 2 10 10 N 1.46902 * 109.47460 * 179.97438 * 9 8 7 11 11 C 1.46896 * 111.00151 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47177 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99713 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00205 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99851 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00054 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47275 * 89.99736 * 16 14 12 18 18 H 1.48497 * 109.47392 * 210.00181 * 16 14 12 19 19 H 1.48504 * 109.47284 * 330.00327 * 16 14 12 20 20 H 1.08993 * 109.47197 * 270.02066 * 1 2 3 21 21 H 1.09005 * 109.46763 * 30.02164 * 1 2 3 22 22 H 1.09000 * 109.47166 * 150.01378 * 1 2 3 23 23 H 1.07999 * 119.62072 * 0.02562 * 3 2 1 24 24 H 1.07995 * 119.61420 * 179.97438 * 5 4 3 25 25 H 1.07994 * 120.42499 * 179.97438 * 6 5 4 26 26 H 1.09000 * 109.46791 * 205.01950 * 8 7 2 27 27 H 1.08990 * 109.47344 * 325.02359 * 8 7 2 28 28 H 1.09003 * 109.47285 * 300.00291 * 9 8 7 29 29 H 1.09008 * 109.46932 * 59.99900 * 9 8 7 30 30 H 1.00903 * 111.00039 * 303.95600 * 10 9 8 31 31 H 1.09002 * 109.47482 * 300.00412 * 11 10 9 32 32 H 1.09004 * 109.46948 * 60.00497 * 11 10 9 33 33 H 0.97001 * 119.99559 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2256 0.0822 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 2.2089 -1.1954 0.0005 8 6 1.4830 -2.5162 0.0005 9 6 1.1282 -2.9032 -1.4366 10 7 0.4212 -4.1908 -1.4367 11 6 0.0633 -4.5949 -2.8029 12 6 -0.6592 -5.9167 -2.7629 13 1 -0.8354 -6.4074 -1.8170 14 6 -1.0954 -6.4998 -3.9337 15 7 -0.8804 -5.9025 -5.0855 16 14 -1.9903 -8.1386 -3.8841 17 1 -3.4501 -7.9016 -3.7497 18 1 -1.7237 -8.8864 -5.1390 19 1 -1.5088 -8.9307 -2.7240 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8901 -0.5136 23 1 1.6675 2.1276 0.0004 24 1 5.3046 0.1284 0.0005 25 1 4.1736 -2.0589 -0.0009 26 1 2.1239 -3.2830 0.4356 27 1 0.5699 -2.4289 0.5892 28 1 0.4873 -2.1363 -1.8717 29 1 2.0414 -2.9904 -2.0253 30 1 0.9693 -4.9044 -0.9801 31 1 -0.5854 -3.8399 -3.2470 32 1 0.9689 -4.6934 -3.4016 33 1 -1.1870 -6.3129 -5.9092 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757400.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:54 Heat of formation + Delta-G solvation = 15.393094 kcal Electronic energy + Delta-G solvation = -14067.169497 eV Core-core repulsion = 11705.920883 eV Total energy + Delta-G solvation = -2361.248614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33267 -36.18869 -34.09339 -32.64844 -32.06929 -29.22189 -27.28852 -26.03237 -23.26468 -22.30168 -21.34937 -20.88991 -16.73281 -16.51417 -16.33805 -15.11104 -14.91521 -14.57417 -14.37568 -13.56164 -13.44612 -13.21820 -12.73097 -12.59722 -12.17348 -11.95351 -11.88511 -11.53468 -11.17517 -10.82515 -10.71161 -10.56064 -10.00324 -9.44495 -9.41856 -9.15914 -8.88263 -8.50718 -7.37353 -6.05859 -4.08286 1.11488 1.26804 3.30657 3.36405 3.39991 3.77675 4.39983 4.43898 4.65919 4.73688 4.95042 5.00921 5.30063 5.35252 5.40534 5.44017 5.57281 5.65392 5.71370 5.73960 5.94930 5.98866 6.14321 6.23314 6.42764 6.51730 6.74001 7.19987 7.37436 7.74424 7.95958 8.08633 8.33024 8.55695 9.00830 9.56874 11.05304 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.057876 B = 0.004694 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.675718 B = 5963.440523 C = 6070.773903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C 0.094 3.906 4 N -0.492 5.492 5 C 0.088 3.912 6 C -0.168 4.168 7 C -0.031 4.031 8 C -0.083 4.083 9 C 0.066 3.934 10 N -0.690 5.690 11 C 0.194 3.806 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.152 0.848 24 H 0.152 0.848 25 H 0.133 0.867 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.019 0.981 30 H 0.329 0.671 31 H 0.028 0.972 32 H -0.014 1.014 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 10.472 10.308 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.134 4.134 3 C -0.063 4.063 4 N -0.200 5.200 5 C -0.069 4.069 6 C -0.188 4.188 7 C -0.039 4.039 8 C -0.121 4.121 9 C -0.064 4.064 10 N -0.320 5.320 11 C 0.067 3.933 12 C -0.554 4.554 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.091 0.909 21 H 0.087 0.913 22 H 0.100 0.900 23 H 0.169 0.831 24 H 0.169 0.831 25 H 0.151 0.849 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.145 0.855 31 H 0.046 0.954 32 H 0.004 0.996 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.091 11.532 10.223 16.571 hybrid contribution 0.037 -1.921 -0.546 1.998 sum 6.128 9.611 9.677 14.952 Atomic orbital electron populations 1.20838 0.90064 1.03927 1.02662 1.20863 0.97807 0.93529 1.01167 1.22627 0.89930 0.97357 0.96349 1.67631 1.08383 1.31477 1.12527 1.22658 1.00138 0.87776 0.96296 1.22083 0.94722 0.99645 1.02308 1.20323 0.93609 0.95591 0.94387 1.20698 1.00234 0.92058 0.99101 1.21818 0.96548 0.94652 0.93366 1.60680 1.45637 1.02905 1.22827 1.19556 0.94849 0.96156 0.82718 1.21182 1.36555 1.04606 0.93074 0.91907 1.24998 0.96235 0.98004 0.95342 1.69966 1.46903 1.39146 0.97719 0.86466 0.80008 0.83373 0.77360 1.20574 1.21285 1.19825 0.90941 0.91322 0.89972 0.83068 0.83069 0.84915 0.90934 0.89574 0.91538 0.96281 0.85506 0.95422 0.99587 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.30 36.00 0.33 -0.94 16 2 C -0.13 -1.64 5.90 -104.49 -0.62 -2.25 16 3 C 0.09 1.15 10.86 -17.55 -0.19 0.96 16 4 N -0.49 -6.57 10.36 -13.26 -0.14 -6.71 16 5 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 6 C -0.17 -2.02 9.80 -39.44 -0.39 -2.41 16 7 C -0.03 -0.40 5.17 -104.31 -0.54 -0.94 16 8 C -0.08 -1.14 4.95 -27.88 -0.14 -1.28 16 9 C 0.07 1.15 5.51 -3.82 -0.02 1.13 16 10 N -0.69 -14.50 6.49 -115.05 -0.75 -15.24 16 11 C 0.19 5.08 5.44 -4.98 -0.03 5.05 16 12 C -0.52 -14.57 9.32 -34.44 -0.32 -14.89 16 13 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 16 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 22 H 0.08 1.02 5.63 -51.93 -0.29 0.73 16 23 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 24 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 25 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.09 1.16 7.10 -51.93 -0.37 0.79 16 28 H 0.07 1.19 6.98 -51.93 -0.36 0.83 16 29 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.33 6.52 8.72 -39.29 -0.34 6.18 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -31.03 281.34 -7.84 -38.87 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.71 Total: 1.64 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.20 Total: -13.21 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.15 Total: -48.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.03 -7.84 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757400.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.265 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds