Wall clock time and date at job start Sun Mar 29 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48493 * 109.47165 * 274.01780 * 3 2 1 5 5 H 1.48502 * 109.47125 * 34.02036 * 3 2 1 6 6 H 1.48498 * 109.47077 * 154.01567 * 3 2 1 7 7 C 1.37879 * 119.99510 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00161 * 6.82666 * 7 2 1 9 9 C 1.50706 * 119.99706 * 186.82761 * 7 2 1 10 10 O 1.42903 * 110.36712 * 58.19998 * 9 7 2 11 11 C 1.54260 * 110.32177 * 180.37760 * 9 7 2 12 12 C 1.54380 * 105.14647 * 118.84543 * 11 9 7 13 13 N 1.48728 * 104.51860 * 336.26644 * 12 11 9 14 14 C 1.46899 * 111.01380 * 158.96520 * 13 12 11 15 15 C 1.53000 * 109.47098 * 54.49663 * 14 13 12 16 16 F 1.39905 * 109.46910 * 299.99840 * 15 14 13 17 17 F 1.39900 * 109.47432 * 59.99336 * 15 14 13 18 18 C 1.48558 * 104.28603 * 39.36562 * 13 12 11 19 19 H 0.97004 * 119.99578 * 0.02562 * 1 2 3 20 20 H 0.96693 * 114.00508 * 60.72822 * 10 9 7 21 21 H 1.08996 * 110.32642 * 237.79008 * 11 9 7 22 22 H 1.08999 * 110.32625 * 359.89924 * 11 9 7 23 23 H 1.08996 * 110.41594 * 94.97957 * 12 11 9 24 24 H 1.08999 * 110.41220 * 217.42184 * 12 11 9 25 25 H 1.09000 * 109.46960 * 174.49280 * 14 13 12 26 26 H 1.08994 * 109.47310 * 294.49576 * 14 13 12 27 27 H 1.09000 * 109.47329 * 180.02562 * 15 14 13 28 28 H 1.08997 * 110.41169 * 201.79366 * 18 13 12 29 29 H 1.08997 * 110.51053 * 79.39974 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4118 2.0954 -1.3966 5 1 1.4918 2.6266 0.7833 6 1 3.5866 1.4170 0.6134 7 6 2.0044 -1.1941 -0.0005 8 1 1.4701 -2.1260 -0.1121 9 6 3.5035 -1.1989 0.1546 10 8 3.8788 -0.5639 1.3786 11 6 4.0417 -2.6439 0.1137 12 6 4.9865 -2.6881 -1.1064 13 7 4.5125 -1.5856 -1.9851 14 6 5.5659 -1.1668 -2.9194 15 6 6.0671 -2.3827 -3.7012 16 9 6.5837 -3.3295 -2.8101 17 9 5.0058 -2.9467 -4.4172 18 6 4.1688 -0.4888 -1.0439 19 1 -0.4850 0.8401 -0.0004 20 1 3.5262 -0.9944 2.1693 21 1 4.5923 -2.8689 1.0271 22 1 3.2216 -3.3499 -0.0168 23 1 6.0163 -2.5107 -0.7965 24 1 4.9024 -3.6469 -1.6179 25 1 5.1634 -0.4291 -3.6136 26 1 6.3928 -0.7275 -2.3615 27 1 6.8490 -2.0720 -4.3942 28 1 3.4703 0.2066 -1.5094 29 1 5.0690 0.0354 -0.7232 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:20 Heat of formation + Delta-G solvation = -158.168976 kcal Electronic energy + Delta-G solvation = -16125.425883 eV Core-core repulsion = 13104.702861 eV Total energy + Delta-G solvation = -3020.723022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.85570 -47.84256 -40.24709 -36.86980 -34.45722 -32.80794 -30.06296 -29.17397 -26.18228 -23.90788 -22.31127 -21.38234 -19.14097 -18.55153 -18.22558 -17.36385 -17.07300 -16.57671 -16.13112 -15.45428 -15.14376 -14.76276 -14.69049 -14.27457 -14.17704 -13.86766 -13.59781 -13.41376 -13.30552 -12.61691 -12.38173 -12.27769 -12.01292 -11.73492 -11.38317 -10.98475 -10.77576 -10.23733 -9.46384 -8.33930 -6.44615 1.33743 1.40480 1.64783 2.39431 2.78713 2.97848 3.04351 3.38083 3.62352 3.75066 3.97807 4.00249 4.21966 4.34488 4.38979 4.53356 4.62655 4.69714 4.85175 5.02490 5.21547 5.33512 5.56954 5.79137 6.02145 6.12565 6.64881 7.16777 7.35144 8.81232 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.039586 B = 0.009991 C = 0.009524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.142422 B = 2801.813908 C = 2939.231690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.028 3.972 3 Si 0.937 3.063 4 H -0.282 1.282 5 H -0.302 1.302 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.032 0.968 9 C 0.213 3.787 10 O -0.581 6.581 11 C -0.140 4.140 12 C 0.044 3.956 13 N -0.521 5.521 14 C -0.019 4.019 15 C 0.264 3.736 16 F -0.216 7.216 17 F -0.217 7.217 18 C 0.055 3.945 19 H 0.266 0.734 20 H 0.376 0.624 21 H 0.082 0.918 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.059 0.941 29 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.925 -1.611 -5.303 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.209 1.209 5 H -0.230 1.230 6 H -0.131 1.131 7 C -0.574 4.574 8 H 0.050 0.950 9 C 0.172 3.828 10 O -0.389 6.389 11 C -0.178 4.178 12 C -0.083 4.083 13 N -0.247 5.247 14 C -0.148 4.148 15 C 0.211 3.789 16 F -0.197 7.197 17 F -0.199 7.199 18 C -0.073 4.073 19 H 0.074 0.926 20 H 0.225 0.775 21 H 0.101 0.899 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.132 0.868 26 H 0.103 0.897 27 H 0.184 0.816 28 H 0.078 0.922 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.639 -1.331 -6.034 16.816 hybrid contribution -0.323 0.391 0.809 0.955 sum 15.317 -0.940 -5.225 16.211 Atomic orbital electron populations 1.70094 1.08489 1.28189 1.51256 1.25843 0.95218 1.03350 0.92706 0.86049 0.82150 0.77941 0.77632 1.20913 1.22994 1.13103 1.21609 0.91842 0.93132 1.50855 0.95010 1.19639 0.91457 0.89198 0.82459 1.86432 1.77203 1.58670 1.16549 1.22949 0.98593 0.97764 0.98525 1.23282 0.96800 0.95399 0.92829 1.65378 1.36388 1.07016 1.15887 1.23668 0.95698 0.97476 0.97985 1.22446 0.86402 0.83410 0.86620 1.92940 1.87294 1.68598 1.70882 1.92970 1.60917 1.87117 1.78868 1.23088 0.98269 0.93386 0.92566 0.92571 0.77546 0.89925 0.92938 0.92095 0.90090 0.86764 0.89736 0.81570 0.92236 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.50 13.96 21.45 0.30 -59.20 15 2 C 0.03 1.63 5.43 84.66 0.46 2.09 15 3 Si 0.94 45.36 24.05 68.60 1.65 47.01 15 4 H -0.28 -13.25 7.09 99.48 0.71 -12.54 15 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 15 6 H -0.21 -9.45 5.22 99.48 0.52 -8.93 15 7 C -0.54 -30.72 8.82 25.60 0.23 -30.50 15 8 H 0.03 2.05 7.60 -2.91 -0.02 2.02 15 9 C 0.21 9.75 0.90 -10.64 -0.01 9.74 15 10 O -0.58 -24.97 10.16 -148.98 -1.51 -26.48 15 11 C -0.14 -5.55 6.43 31.49 0.20 -5.34 15 12 C 0.04 1.53 4.69 86.42 0.41 1.94 15 13 N -0.52 -19.39 5.41 -881.05 -4.77 -24.16 15 14 C -0.02 -0.50 5.45 86.30 0.47 -0.03 15 15 C 0.26 5.75 5.42 71.98 0.39 6.14 15 16 F -0.22 -5.43 13.66 44.97 0.61 -4.82 15 17 F -0.22 -6.35 17.26 44.97 0.78 -5.58 15 18 C 0.05 2.29 4.15 86.45 0.36 2.65 15 19 H 0.27 15.77 8.31 -92.71 -0.77 15.00 15 20 H 0.38 14.11 9.08 -74.06 -0.67 13.43 15 21 H 0.08 2.82 7.98 -2.39 -0.02 2.81 15 22 H 0.05 2.27 7.42 -2.39 -0.02 2.25 15 23 H 0.06 1.86 7.41 -2.39 -0.02 1.84 15 24 H 0.08 2.79 6.95 -2.39 -0.02 2.78 15 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 26 H 0.08 1.80 7.88 -2.39 -0.02 1.78 15 27 H 0.17 1.78 8.14 -2.39 -0.02 1.76 15 28 H 0.06 2.76 4.85 -2.39 -0.01 2.75 15 29 H 0.05 1.92 7.76 -2.39 -0.02 1.91 15 Total: -1.00 -70.93 236.74 -0.13 -71.06 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.31 Total: 15.47 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 2.50 Total: -13.30 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -4.47 Total: -83.36 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.51 Total: -26.48 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 1.39 Total: -10.39 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.65 Total: 47.01 kcal Total: -70.93 -0.13 -71.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.112 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds