Wall clock time and date at job start Sun Mar 29 2020 22:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48505 * 109.46781 * 269.99740 * 3 2 1 5 5 H 1.48493 * 109.47460 * 29.99580 * 3 2 1 6 6 H 1.48494 * 109.47211 * 149.99824 * 3 2 1 7 7 C 1.38978 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00385 * 0.02562 * 7 2 1 9 9 N 1.36978 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00296 * 180.02562 * 9 7 2 11 11 O 1.21629 * 119.99862 * 359.97438 * 10 9 7 12 12 C 1.47355 * 120.00312 * 180.02562 * 10 9 7 13 13 C 1.38107 * 126.41971 * 0.17027 * 12 10 9 14 14 N 1.34293 * 107.40312 * 180.22139 * 13 12 10 15 15 H 0.96997 * 125.75197 * 179.78419 * 14 13 12 16 16 N 1.39928 * 108.49638 * 359.76663 * 14 13 12 17 17 C 1.30445 * 108.91544 * 359.97438 * 16 14 13 18 18 C 1.50706 * 125.98789 * 179.97438 * 17 16 14 19 19 C 1.53000 * 117.49681 * 300.02659 * 18 17 16 20 20 C 1.53002 * 60.02940 * 107.47810 * 19 18 17 21 21 H 0.97003 * 119.99896 * 0.02562 * 1 2 3 22 22 H 0.97005 * 120.00423 * 0.02562 * 9 7 2 23 23 H 1.07995 * 126.30120 * 0.02562 * 13 12 10 24 24 H 1.08999 * 115.56047 * 154.34106 * 18 17 16 25 25 H 1.09002 * 117.49833 * 214.97915 * 19 18 17 26 26 H 1.09002 * 117.49953 * 359.97438 * 19 18 17 27 27 H 1.09000 * 117.49996 * 107.50493 * 20 19 18 28 28 H 1.08999 * 117.49664 * 252.51862 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2036 0.0005 8 1 1.4689 -2.1389 0.0005 9 7 3.3787 -1.2037 0.0000 10 6 4.0526 -2.3709 0.0000 11 8 3.4444 -3.4242 0.0009 12 6 5.5261 -2.3710 0.0000 13 6 6.3461 -1.2597 0.0033 14 7 7.6157 -1.6974 -0.0029 15 1 8.4080 -1.1378 -0.0054 16 7 7.6029 -3.0966 -0.0049 17 6 6.3651 -3.5082 0.0006 18 6 5.9096 -4.9447 0.0002 19 6 6.3375 -5.8212 -1.1786 20 6 6.9766 -6.0245 0.1966 21 1 -0.4850 0.8401 -0.0004 22 1 3.8638 -0.3637 -0.0004 23 1 6.0254 -0.2285 0.0068 24 1 4.9247 -5.1259 0.4306 25 1 5.6341 -6.5790 -1.5236 26 1 6.9481 -5.3587 -1.9540 27 1 6.6938 -6.9161 0.7562 28 1 8.0077 -5.6954 0.3259 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613639116.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:06 Heat of formation + Delta-G solvation = 37.769573 kcal Electronic energy + Delta-G solvation = -14457.172885 eV Core-core repulsion = 11895.635582 eV Total energy + Delta-G solvation = -2561.537303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.35321 -39.74652 -37.95422 -35.96660 -33.77227 -32.35561 -31.29892 -27.01809 -24.92010 -23.68248 -23.19256 -21.07830 -20.76152 -20.13152 -18.72708 -17.35034 -16.62166 -16.50681 -16.02605 -15.60159 -15.30754 -14.91544 -14.73986 -14.16916 -13.94052 -12.96864 -12.87706 -12.39477 -12.38895 -12.13729 -11.96092 -11.87525 -11.50513 -11.28369 -10.44009 -10.23816 -10.21689 -9.72648 -8.38705 -5.97241 0.60605 1.07641 1.30228 1.42433 1.46868 1.84629 2.26041 2.50348 2.99120 3.05784 3.30198 3.46432 3.69651 4.07089 4.08754 4.21897 4.47946 4.52690 4.75680 4.77000 4.96201 5.25116 5.29299 5.39543 5.59329 5.98553 6.32111 6.53559 6.66441 6.90075 7.42232 7.99471 8.78824 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039865 B = 0.008128 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.206305 B = 3443.843555 C = 4066.871693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.225 1.225 7 C -0.326 4.326 8 H 0.057 0.943 9 N -0.581 5.581 10 C 0.526 3.474 11 O -0.621 6.621 12 C -0.297 4.297 13 C 0.116 3.884 14 N -0.442 5.442 15 H 0.462 0.538 16 N -0.310 5.310 17 C 0.147 3.853 18 C -0.111 4.111 19 C -0.154 4.154 20 C -0.145 4.145 21 H 0.279 0.721 22 H 0.388 0.612 23 H 0.223 0.777 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.470 1.041 -0.400 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.215 4.215 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.148 1.148 7 C -0.455 4.455 8 H 0.075 0.925 9 N -0.221 5.221 10 C 0.316 3.684 11 O -0.507 6.507 12 C -0.312 4.312 13 C -0.038 4.038 14 N -0.149 5.149 15 H 0.312 0.688 16 N -0.134 5.134 17 C -0.020 4.020 18 C -0.131 4.131 19 C -0.192 4.192 20 C -0.182 4.182 21 H 0.089 0.911 22 H 0.224 0.776 23 H 0.239 0.761 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 19.099 0.116 -0.399 19.104 hybrid contribution -0.992 1.463 0.020 1.768 sum 18.107 1.580 -0.379 18.180 Atomic orbital electron populations 1.69804 1.08193 1.29295 1.50060 1.26144 0.96505 1.02770 0.96050 0.85424 0.79871 0.76531 0.80130 1.17867 1.20043 1.14761 1.19024 0.81234 0.95161 1.50089 0.92486 1.41769 1.05767 1.06947 1.67609 1.17455 0.86248 0.83579 0.81153 1.90570 1.70670 1.32550 1.56910 1.20348 0.93252 0.94153 1.23447 1.23534 0.84312 1.00319 0.95661 1.45944 1.07590 1.05014 1.56383 0.68842 1.76908 1.19070 0.90004 1.27383 1.21505 0.89429 0.95127 0.95923 1.20432 1.00164 0.85208 1.07316 1.22998 1.03198 1.01354 0.91647 1.23069 0.97438 0.98807 0.98932 0.91111 0.77635 0.76057 0.87358 0.87335 0.88740 0.86649 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.96 21.67 0.30 -55.68 15 2 C -0.02 -0.89 5.50 84.93 0.47 -0.42 15 3 Si 0.96 37.40 27.74 68.60 1.90 39.30 15 4 H -0.25 -9.30 7.11 99.48 0.71 -8.60 15 5 H -0.28 -10.70 7.11 99.48 0.71 -9.99 15 6 H -0.22 -7.01 6.52 99.48 0.65 -6.36 15 7 C -0.33 -19.20 10.16 84.07 0.85 -18.34 15 8 H 0.06 4.00 7.38 -2.91 -0.02 3.98 15 9 N -0.58 -27.99 5.08 -310.02 -1.57 -29.56 15 10 C 0.53 25.71 7.76 86.64 0.67 26.38 15 11 O -0.62 -35.98 14.58 -4.12 -0.06 -36.04 15 12 C -0.30 -11.12 6.13 -20.15 -0.12 -11.25 15 13 C 0.12 2.90 11.52 84.29 0.97 3.87 15 14 N -0.44 -9.44 7.29 -56.26 -0.41 -9.85 15 15 H 0.46 5.32 8.96 -213.43 -1.91 3.40 15 16 N -0.31 -9.14 12.22 -46.65 -0.57 -9.71 15 17 C 0.15 5.21 6.80 43.52 0.30 5.50 15 18 C -0.11 -3.83 5.65 -11.51 -0.07 -3.90 15 19 C -0.15 -4.27 10.23 30.60 0.31 -3.96 15 20 C -0.15 -3.70 10.14 30.62 0.31 -3.39 15 21 H 0.28 15.27 8.31 -92.71 -0.77 14.50 15 22 H 0.39 15.00 4.68 -92.70 -0.43 14.56 15 23 H 0.22 3.56 7.46 -2.91 -0.02 3.53 15 24 H 0.11 4.45 6.74 -2.39 -0.02 4.43 15 25 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 27 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 28 H 0.10 2.52 7.90 -2.39 -0.02 2.50 15 Total: -1.00 -79.48 251.34 2.10 -77.38 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -1.19 Total: 29.66 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 3.70 Total: -5.49 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -2.25 Total: -104.81 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.06 Total: -36.04 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 1.90 Total: 39.30 kcal Total: -79.48 2.10 -77.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613639116.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.153 kcal (2) G-P(sol) polarization free energy of solvation -79.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds