Wall clock time and date at job start Sun Mar 29 2020 21:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47090 * 2 1 4 4 C 1.53003 * 109.47314 * 240.00664 * 2 1 3 5 5 C 1.50699 * 109.47312 * 175.00100 * 4 2 1 6 6 C 1.38224 * 119.61984 * 124.99871 * 5 4 2 7 7 C 1.38632 * 119.15943 * 179.97438 * 6 5 4 8 8 C 1.38673 * 118.42152 * 359.97438 * 7 6 5 9 9 C 1.38184 * 119.16002 * 0.02562 * 8 7 6 10 10 N 1.31849 * 119.61329 * 304.71802 * 5 4 2 11 11 N 1.46901 * 109.47518 * 120.00164 * 2 1 3 12 12 C 1.46895 * 110.99816 * 275.00138 * 11 2 1 13 13 C 1.50706 * 109.47182 * 179.97438 * 12 11 2 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 H 1.09000 * 109.47670 * 60.00117 * 1 2 3 22 22 H 1.09003 * 109.47090 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47331 * 299.99401 * 1 2 3 24 24 H 1.09004 * 109.46507 * 294.99884 * 4 2 1 25 25 H 1.08993 * 109.47203 * 54.98940 * 4 2 1 26 26 H 1.07997 * 120.42128 * 359.95228 * 6 5 4 27 27 H 1.07995 * 120.78565 * 180.02562 * 7 6 5 28 28 H 1.07998 * 120.41815 * 180.02562 * 8 7 6 29 29 H 1.08005 * 119.61084 * 179.97438 * 9 8 7 30 30 H 1.00902 * 110.99849 * 38.95517 * 11 2 1 31 31 H 1.09001 * 109.47613 * 60.00104 * 12 11 2 32 32 H 1.08998 * 109.47678 * 300.00000 * 12 11 2 33 33 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 6 4.3045 -1.7633 -1.4132 7 6 5.6853 -1.6543 -1.4715 8 6 6.2499 -0.3886 -1.4268 9 6 5.4234 0.7142 -1.3260 10 7 4.1131 0.5731 -1.2774 11 7 2.0197 -0.6925 1.1994 12 6 2.0825 0.2225 2.3468 13 6 2.5875 -0.5219 3.5560 14 1 2.8372 -1.5698 3.4794 15 6 2.7365 0.1363 4.7582 16 7 2.4385 1.4140 4.8497 17 14 3.3631 -0.7862 6.2568 18 1 4.8446 -0.6981 6.3086 19 1 2.7880 -0.1828 7.4857 20 1 2.9548 -2.2112 6.1672 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.7516 -1.7714 -1.2057 25 1 1.6053 -0.2617 -2.1370 26 1 3.8306 -2.7332 -1.4456 27 1 6.3063 -2.5343 -1.5506 28 1 7.3221 -0.2663 -1.4704 29 1 5.8555 1.7035 -1.2902 30 1 1.4496 -1.4980 1.4100 31 1 1.0871 0.6162 2.5526 32 1 2.7588 1.0462 2.1182 33 1 2.5436 1.8772 5.6955 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703276440.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:44 Heat of formation + Delta-G solvation = 21.563161 kcal Electronic energy + Delta-G solvation = -14544.920920 eV Core-core repulsion = 12183.939860 eV Total energy + Delta-G solvation = -2360.981060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.81544 -36.53905 -33.13160 -32.09678 -31.66338 -29.69360 -26.60938 -25.84564 -23.21454 -22.23572 -21.44916 -19.94154 -16.64557 -16.28345 -15.78853 -15.20732 -14.82812 -14.17454 -13.91004 -13.71272 -13.14686 -12.83988 -12.79082 -12.07237 -11.82742 -11.70040 -11.52260 -11.20555 -10.93601 -10.68733 -10.56611 -10.28892 -9.81521 -9.50400 -9.13311 -9.00365 -8.52779 -8.43021 -7.16446 -5.97810 -3.99244 1.51199 1.65414 3.34202 3.39660 3.43375 4.17397 4.46561 4.69627 4.98863 5.12028 5.25036 5.37746 5.40276 5.47993 5.59052 5.69719 5.90505 5.94349 5.98723 6.07918 6.12142 6.34626 6.46817 6.49595 6.58488 6.75485 7.08070 7.38102 7.53971 7.84707 8.21023 8.43036 8.50456 8.71679 9.10440 9.65083 11.13226 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.024558 B = 0.007947 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.889987 B = 3522.342038 C = 4144.614742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.082 0.918 4 C -0.059 4.059 5 C 0.168 3.832 6 C -0.167 4.167 7 C -0.076 4.076 8 C -0.190 4.190 9 C 0.104 3.896 10 N -0.480 5.480 11 N -0.683 5.683 12 C 0.198 3.802 13 C -0.511 4.511 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.325 0.675 31 H -0.015 1.015 32 H 0.026 0.974 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -4.722 -13.438 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.024 4.024 3 H 0.100 0.900 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.187 4.187 7 C -0.102 4.102 8 C -0.210 4.210 9 C -0.053 4.053 10 N -0.189 5.189 11 N -0.312 5.312 12 C 0.072 3.928 13 C -0.550 4.550 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.003 0.997 32 H 0.044 0.956 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.709 -3.741 -13.401 14.175 hybrid contribution 0.080 -1.041 1.212 1.600 sum 2.790 -4.782 -12.189 13.387 Atomic orbital electron populations 1.22504 0.98163 1.01351 1.01754 1.21467 0.91386 0.98775 0.90780 0.89959 1.20630 0.89127 1.01416 0.98618 1.21032 0.96567 0.88032 0.91375 1.21872 0.94359 0.99663 1.02766 1.21463 0.95033 0.97520 0.96202 1.21987 1.00912 0.93870 1.04268 1.22639 0.89139 0.98767 0.94779 1.67409 1.12461 1.26993 1.12016 1.60730 1.55223 1.10376 1.04904 1.19511 0.95077 0.91760 0.86490 1.21203 1.43281 0.96767 0.93765 0.92196 1.24981 0.95765 0.94911 0.98949 1.69970 1.49041 1.08839 1.25867 0.86520 0.78983 0.79865 0.82153 1.20719 1.21311 1.19907 0.93079 0.93046 0.92289 0.90808 0.90690 0.85406 0.85553 0.85545 0.83383 0.85804 0.99681 0.95586 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 9.16 37.16 0.34 -2.50 16 2 C 0.09 1.60 2.51 -67.71 -0.17 1.43 16 3 H 0.08 1.72 7.46 -51.93 -0.39 1.33 16 4 C -0.06 -0.90 5.29 -27.88 -0.15 -1.05 16 5 C 0.17 2.81 5.90 -82.59 -0.49 2.32 16 6 C -0.17 -2.47 9.71 -39.44 -0.38 -2.85 16 7 C -0.08 -1.03 10.18 -39.28 -0.40 -1.43 16 8 C -0.19 -2.58 10.11 -39.44 -0.40 -2.98 16 9 C 0.10 1.61 11.18 -17.55 -0.20 1.41 16 10 N -0.48 -8.61 9.79 -9.47 -0.09 -8.70 16 11 N -0.68 -14.93 5.95 -107.99 -0.64 -15.57 16 12 C 0.20 5.37 5.24 -4.98 -0.03 5.34 16 13 C -0.51 -14.91 9.32 -34.44 -0.32 -15.23 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 17 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 23 H 0.06 1.05 7.45 -51.93 -0.39 0.66 16 24 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.13 1.60 7.95 -52.49 -0.42 1.18 16 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.33 6.77 8.46 -39.29 -0.33 6.44 16 31 H -0.01 -0.42 7.44 -51.93 -0.39 -0.80 16 32 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 283.36 15.07 4.27 4.27 Total: -1.00 -32.37 283.36 -7.86 -40.22 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.82 Total: 3.38 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.29 Total: -14.01 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.00 Total: -51.08 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.37 -7.86 -40.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703276440.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.788 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds