Wall clock time and date at job start Sun Mar 29 2020 22:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38342 * 120.44840 * 2 1 4 4 C 1.38838 * 118.50567 * 180.02562 * 3 2 1 5 5 C 1.38064 * 119.32829 * 359.97438 * 4 3 2 6 6 N 1.31941 * 120.85290 * 359.75298 * 5 4 3 7 7 C 1.32422 * 121.62490 * 0.51876 * 6 5 4 8 8 N 1.39008 * 119.70708 * 179.76053 * 7 6 5 9 9 N 1.40104 * 119.99740 * 359.71754 * 8 7 6 10 10 C 1.34772 * 119.99623 * 179.72660 * 9 8 7 11 11 O 1.21695 * 120.00176 * 0.28067 * 10 9 8 12 12 C 1.46375 * 120.00131 * 180.27859 * 10 9 8 13 13 H 1.08005 * 119.99733 * 353.94178 * 12 10 9 14 14 C 1.40042 * 120.00170 * 173.94085 * 12 10 9 15 15 N 1.30669 * 120.00455 * 6.15206 * 14 12 10 16 16 Si 1.86803 * 119.99867 * 186.14923 * 14 12 10 17 17 H 1.48498 * 109.47177 * 94.98772 * 16 14 12 18 18 H 1.48502 * 109.47127 * 214.98238 * 16 14 12 19 19 H 1.48493 * 109.47253 * 334.98410 * 16 14 12 20 20 H 1.08999 * 109.46969 * 269.97803 * 1 2 3 21 21 H 1.08998 * 109.47683 * 29.98288 * 1 2 3 22 22 H 1.09000 * 109.47265 * 149.98066 * 1 2 3 23 23 H 1.08002 * 120.74960 * 0.04235 * 3 2 1 24 24 H 1.08001 * 120.33494 * 179.97438 * 4 3 2 25 25 H 1.08001 * 119.57254 * 179.97438 * 5 4 3 26 26 H 0.97002 * 119.99800 * 179.72458 * 8 7 6 27 27 H 0.96992 * 119.99878 * 0.02562 * 9 8 7 28 28 H 0.97000 * 120.00488 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2080 1.1926 0.0000 4 6 3.5956 1.1456 -0.0005 5 6 4.2307 -0.0804 -0.0005 6 7 3.5362 -1.2022 0.0049 7 6 2.2120 -1.1991 0.0003 8 7 1.5202 -2.4048 0.0012 9 7 2.2241 -3.6162 0.0011 10 6 1.5535 -4.7852 0.0076 11 8 0.3365 -4.7885 0.0084 12 6 2.2888 -6.0508 0.0136 13 1 3.3643 -6.0509 -0.0859 14 6 1.5979 -7.2614 0.1483 15 7 0.2912 -7.2716 0.1478 16 14 2.5443 -8.8619 0.3287 17 1 2.6884 -9.1920 1.7693 18 1 1.8070 -9.9530 -0.3577 19 1 3.8896 -8.7130 -0.2821 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6877 2.1390 0.0007 24 1 4.1724 2.0587 -0.0010 25 1 5.3099 -0.1216 -0.0014 26 1 0.5502 -2.4074 0.0019 27 1 3.1941 -3.6134 0.0007 28 1 -0.1873 -8.1102 0.2415 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791218600.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:58 Heat of formation + Delta-G solvation = 29.137051 kcal Electronic energy + Delta-G solvation = -14244.655927 eV Core-core repulsion = 11682.744290 eV Total energy + Delta-G solvation = -2561.911637 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98373 -37.50223 -34.83894 -33.35647 -32.58819 -31.29847 -28.76408 -26.89826 -25.95074 -22.55137 -21.77468 -20.25049 -18.32085 -16.80989 -16.47848 -15.45351 -15.03432 -14.72967 -14.44088 -14.08160 -13.57726 -12.98223 -12.75918 -12.57108 -12.49444 -12.30961 -11.37924 -11.30305 -11.20387 -10.75297 -10.59963 -10.33801 -9.37102 -9.12685 -8.97296 -8.42082 -7.90339 -6.53503 -6.35188 -4.77377 1.53730 1.76540 3.01408 3.09550 3.17968 3.24221 4.07163 4.17615 4.46204 4.59657 5.00040 5.17576 5.26473 5.36183 5.64475 5.69934 5.74384 5.81766 6.09466 6.21037 6.39212 6.56218 6.96272 7.32521 7.32590 7.91111 8.19928 8.27426 8.78782 8.88647 9.31045 10.43002 10.59800 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.053263 B = 0.006300 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.569145 B = 4443.682126 C = 4950.690459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.217 4.217 3 C -0.029 4.029 4 C -0.258 4.258 5 C 0.152 3.848 6 N -0.550 5.550 7 C 0.411 3.589 8 N -0.503 5.503 9 N -0.557 5.557 10 C 0.554 3.446 11 O -0.585 6.585 12 C -0.533 4.533 13 H 0.075 0.925 14 C 0.088 3.912 15 N -0.764 5.764 16 Si 0.917 3.083 17 H -0.271 1.271 18 H -0.278 1.278 19 H -0.262 1.262 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.127 0.873 24 H 0.124 0.876 25 H 0.150 0.850 26 H 0.434 0.566 27 H 0.414 0.586 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 12.361 0.061 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.226 4.226 3 C -0.055 4.055 4 C -0.282 4.282 5 C -0.007 4.007 6 N -0.270 5.270 7 C 0.171 3.829 8 N -0.225 5.225 9 N -0.309 5.309 10 C 0.359 3.641 11 O -0.466 6.466 12 C -0.571 4.571 13 H 0.093 0.907 14 C -0.133 4.133 15 N -0.392 5.392 16 Si 0.741 3.259 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.186 1.186 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.145 0.855 24 H 0.142 0.858 25 H 0.167 0.833 26 H 0.279 0.721 27 H 0.253 0.747 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.817 11.164 0.069 11.799 hybrid contribution 0.160 0.122 0.100 0.225 sum 3.976 11.286 0.168 11.968 Atomic orbital electron populations 1.20554 0.90766 1.02525 1.02120 1.19919 0.96824 0.92074 1.13792 1.21047 0.93926 0.96691 0.93850 1.21603 0.94968 0.98931 1.12744 1.22299 0.99326 0.87020 0.92064 1.67119 1.05921 1.31889 1.22023 1.18154 0.88679 0.84638 0.91438 1.43486 1.06996 0.95648 1.76358 1.45756 1.07561 0.94574 1.82977 1.18616 0.87643 0.80869 0.76977 1.90606 1.13886 1.86072 1.56065 1.20683 0.94391 0.88150 1.53867 0.90661 1.25714 0.94748 1.00304 0.92557 1.70018 1.07428 1.27582 1.34190 0.86205 0.80212 0.80550 0.78955 1.19638 1.20331 1.18643 0.91488 0.91480 0.91902 0.85539 0.85809 0.83301 0.72144 0.74702 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.59 36.00 0.35 -0.97 15 2 C -0.22 -3.31 5.92 -104.27 -0.62 -3.92 15 3 C -0.03 -0.38 9.85 -39.32 -0.39 -0.76 15 4 C -0.26 -3.21 10.10 -39.42 -0.40 -3.61 15 5 C 0.15 2.17 11.17 -17.57 -0.20 1.97 15 6 N -0.55 -9.95 9.37 -12.44 -0.12 -10.07 15 7 C 0.41 7.64 7.58 -155.01 -1.17 6.46 15 8 N -0.50 -10.72 6.33 31.12 0.20 -10.52 15 9 N -0.56 -13.42 6.28 30.19 0.19 -13.23 15 10 C 0.55 15.81 7.86 -12.99 -0.10 15.71 15 11 O -0.58 -18.53 14.88 5.19 0.08 -18.46 15 12 C -0.53 -14.89 9.53 -35.63 -0.34 -15.23 15 13 H 0.08 1.93 7.85 -52.48 -0.41 1.51 15 14 C 0.09 2.39 5.49 -17.37 -0.10 2.30 15 15 N -0.76 -22.41 11.85 55.55 0.66 -21.75 15 16 Si 0.92 19.78 29.56 -169.99 -5.03 14.75 15 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.07 0.70 8.09 -51.93 -0.42 0.28 15 22 H 0.06 0.88 6.57 -51.93 -0.34 0.54 15 23 H 0.13 1.23 8.06 -52.49 -0.42 0.80 15 24 H 0.12 1.17 8.06 -52.49 -0.42 0.75 15 25 H 0.15 1.65 8.06 -52.49 -0.42 1.23 15 26 H 0.43 9.17 5.98 -182.59 -1.09 8.08 15 27 H 0.41 9.33 7.93 -182.60 -1.45 7.88 15 28 H 0.27 7.17 8.29 -40.82 -0.34 6.83 15 LS Contribution 253.73 15.07 3.82 3.82 Total: -1.00 -33.38 253.73 -7.70 -41.08 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -4.54 Total: 12.43 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.97 Total: 1.94 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.93 Total: -55.57 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.08 Total: -18.46 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.38 -7.70 -41.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791218600.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.213 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds