Wall clock time and date at job start Sun Mar 29 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30616 * 1 3 3 Si 1.86802 * 120.00362 * 2 1 4 4 H 1.48498 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46931 * 300.00248 * 3 2 1 6 6 H 1.48507 * 109.46924 * 59.99912 * 3 2 1 7 7 C 1.40163 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.41527 * 120.00112 * 359.97438 * 7 2 1 10 10 O 1.21813 * 119.99941 * 0.02562 * 9 7 2 11 11 N 1.34783 * 120.00055 * 179.97438 * 9 7 2 12 12 C 1.38580 * 119.99794 * 179.97438 * 11 9 7 13 13 C 1.36672 * 126.32264 * 0.03224 * 12 11 9 14 14 C 1.39465 * 107.84615 * 179.97438 * 13 12 11 15 15 N 1.30989 * 108.53718 * 0.02562 * 14 13 12 16 16 N 1.36059 * 126.31554 * 179.97438 * 12 11 9 17 17 C 1.46507 * 126.11640 * 0.06240 * 16 12 11 18 18 C 1.53005 * 117.49583 * 188.56950 * 17 16 12 19 19 C 1.53004 * 117.49561 * 119.94642 * 17 16 12 20 20 H 0.97000 * 119.99645 * 0.02562 * 1 2 3 21 21 H 0.97003 * 119.99569 * 0.02562 * 11 9 7 22 22 H 1.08001 * 126.07419 * 0.22625 * 13 12 11 23 23 H 1.08001 * 125.72664 * 179.97438 * 14 13 12 24 24 H 1.08999 * 115.55147 * 334.28262 * 17 16 12 25 25 H 1.09001 * 117.50055 * 0.02562 * 18 17 16 26 26 H 1.09002 * 117.49638 * 145.02502 * 18 17 16 27 27 H 1.09000 * 117.49747 * 214.97411 * 19 17 16 28 28 H 1.08999 * 117.49909 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7002 1.3463 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8815 2.3964 1.2126 7 6 2.0069 -1.2139 0.0005 8 1 3.0870 -1.2139 0.0010 9 6 1.2993 -2.4395 0.0016 10 8 0.0811 -2.4395 0.0016 11 7 1.9731 -3.6068 0.0016 12 6 1.2802 -4.8069 0.0032 13 6 -0.0782 -4.9573 0.0043 14 6 -0.3569 -6.3238 0.0052 15 7 0.7767 -6.9800 0.0053 16 7 1.8266 -6.0529 0.0030 17 6 3.2573 -6.3684 0.0022 18 6 3.6580 -7.8311 -0.2003 19 6 3.8019 -7.1821 1.1779 20 1 -0.4849 0.8401 -0.0004 21 1 2.9432 -3.6067 0.0013 22 1 -0.8064 -4.1597 0.0006 23 1 -1.3420 -6.7665 0.0065 24 1 3.9070 -5.6045 -0.4249 25 1 2.8573 -8.5586 -0.3333 26 1 4.5715 -8.0297 -0.7608 27 1 4.8100 -6.9538 1.5239 28 1 3.0958 -7.4823 1.9521 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889686805.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:36 Heat of formation + Delta-G solvation = 72.573587 kcal Electronic energy + Delta-G solvation = -14534.326670 eV Core-core repulsion = 11974.298583 eV Total energy + Delta-G solvation = -2560.028088 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49949 -37.63842 -36.69617 -33.57224 -32.50399 -30.18441 -28.42415 -26.34436 -23.04369 -22.42905 -21.55137 -19.81776 -19.01426 -17.73197 -16.73316 -15.57770 -15.11040 -14.65063 -14.31797 -14.07574 -13.27753 -12.71697 -12.56298 -12.52345 -12.02931 -11.54136 -11.42975 -11.22080 -10.82218 -10.74129 -10.54046 -10.39554 -9.83205 -9.75661 -8.99854 -8.07348 -7.75921 -6.96713 -6.45338 -4.99155 2.56932 2.84243 3.00786 3.09391 3.13699 3.72978 3.85117 3.92176 4.39302 4.45089 4.65868 4.81185 4.94447 5.58221 5.59703 5.65651 5.66693 5.91207 6.13960 6.30642 6.53044 7.05721 7.12104 7.20641 7.65028 7.73514 7.96748 8.15640 8.49223 8.72257 9.18963 10.29909 10.49102 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043311 B = 0.007387 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.331225 B = 3789.689571 C = 4359.258728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.548 3.452 10 O -0.551 6.551 11 N -0.671 5.671 12 C 0.350 3.650 13 C -0.307 4.307 14 C 0.056 3.944 15 N -0.330 5.330 16 N -0.383 5.383 17 C 0.089 3.911 18 C -0.165 4.165 19 C -0.183 4.183 20 H 0.274 0.726 21 H 0.389 0.611 22 H 0.174 0.826 23 H 0.174 0.826 24 H 0.133 0.867 25 H 0.109 0.891 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -7.410 0.282 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.356 3.644 10 O -0.432 6.432 11 N -0.317 5.317 12 C 0.128 3.872 13 C -0.340 4.340 14 C -0.129 4.129 15 N -0.153 5.153 16 N -0.172 5.172 17 C -0.016 4.016 18 C -0.202 4.202 19 C -0.222 4.222 20 H 0.085 0.915 21 H 0.222 0.778 22 H 0.191 0.809 23 H 0.191 0.809 24 H 0.151 0.849 25 H 0.128 0.872 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.708 -8.336 0.275 10.703 hybrid contribution 0.683 1.565 0.008 1.708 sum 7.391 -6.771 0.283 10.028 Atomic orbital electron populations 1.70000 1.07299 1.28034 1.31757 1.25756 0.94697 1.00716 0.92394 0.86178 0.80446 0.80899 0.78518 1.18553 1.19843 1.19845 1.19935 0.94383 0.89543 1.53144 0.91009 1.17013 0.87695 0.81231 0.78433 1.90591 1.13414 1.84863 1.54321 1.43819 1.09184 1.02863 1.75858 1.18628 0.91643 0.80118 0.96798 1.21782 0.93631 0.96768 1.21776 1.23602 0.96729 0.93547 0.98976 1.77189 0.93847 1.13806 1.30473 1.48028 1.04001 1.02537 1.62651 1.21489 0.78993 0.96435 1.04650 1.23209 1.03256 0.94603 0.99179 1.23431 1.02448 1.03799 0.92523 0.91480 0.77825 0.80851 0.80873 0.84919 0.87227 0.87973 0.87863 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.92 11.73 55.56 0.65 -20.27 15 2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 15 3 Si 0.92 18.79 29.56 -169.99 -5.02 13.76 15 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 15 7 C -0.53 -14.17 9.30 -37.61 -0.35 -14.52 15 8 H 0.07 1.71 7.85 -52.48 -0.41 1.30 15 9 C 0.55 15.03 7.52 -15.00 -0.11 14.92 15 10 O -0.55 -16.94 11.98 5.09 0.06 -16.88 15 11 N -0.67 -15.32 5.37 -13.99 -0.08 -15.39 15 12 C 0.35 7.90 7.68 -153.11 -1.18 6.72 15 13 C -0.31 -7.16 9.65 -39.69 -0.38 -7.54 15 14 C 0.06 1.11 11.99 -17.45 -0.21 0.90 15 15 N -0.33 -6.56 11.98 30.57 0.37 -6.20 15 16 N -0.38 -7.47 3.97 -53.79 -0.21 -7.68 15 17 C 0.09 1.32 6.67 -67.92 -0.45 0.86 15 18 C -0.16 -2.01 10.19 -26.72 -0.27 -2.28 15 19 C -0.18 -2.28 10.46 -26.72 -0.28 -2.56 15 20 H 0.27 6.92 8.29 -40.82 -0.34 6.58 15 21 H 0.39 7.48 8.06 -40.82 -0.33 7.15 15 22 H 0.17 4.53 5.82 -52.49 -0.31 4.22 15 23 H 0.17 2.72 8.06 -52.49 -0.42 2.30 15 24 H 0.13 1.70 7.70 -51.93 -0.40 1.31 15 25 H 0.11 1.50 7.83 -51.93 -0.41 1.09 15 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 15 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 15 LS Contribution 252.91 15.07 3.81 3.81 Total: -1.00 -32.66 252.91 -6.43 -39.09 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -2.68 Total: 11.05 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.33 Total: -1.29 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.73 Total: -49.54 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.06 Total: -16.88 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.76 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.66 -6.43 -39.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889686805.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.668 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds