Wall clock time and date at job start Sun Mar 29 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38462 * 119.38668 * 2 1 4 4 C 1.38352 * 119.51132 * 179.73007 * 3 2 1 5 5 C 1.39964 * 118.36611 * 0.53768 * 4 3 2 6 6 C 1.47448 * 120.61186 * 179.70811 * 5 4 3 7 7 N 1.34784 * 119.99877 * 5.73914 * 6 5 4 8 8 O 1.21602 * 120.00520 * 185.73537 * 6 5 4 9 9 C 1.40592 * 118.78182 * 359.72654 * 5 4 3 10 10 N 1.38220 * 119.83233 * 179.97438 * 9 5 4 11 11 C 1.36888 * 119.99842 * 174.54771 * 10 9 5 12 12 H 1.08006 * 120.00058 * 0.02562 * 11 10 9 13 13 C 1.38876 * 120.00011 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99833 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00063 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46976 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46963 * 120.00141 * 15 13 11 18 18 H 1.48499 * 109.46906 * 240.00060 * 15 13 11 19 19 N 1.31773 * 119.38885 * 180.27820 * 2 1 3 20 20 H 1.08998 * 109.46544 * 269.72395 * 1 2 3 21 21 H 1.09000 * 109.46989 * 29.72052 * 1 2 3 22 22 H 1.08993 * 109.47088 * 149.72725 * 1 2 3 23 23 H 1.07995 * 120.24675 * 0.02562 * 3 2 1 24 24 H 1.07997 * 120.81480 * 180.24505 * 4 3 2 25 25 H 0.96999 * 120.00018 * 359.97438 * 7 6 5 26 26 H 0.97000 * 119.99810 * 180.02562 * 7 6 5 27 27 H 0.96998 * 119.99988 * 354.55523 * 10 9 5 28 28 H 0.97000 * 119.99939 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2065 0.0000 4 6 3.5699 1.2095 0.0057 5 6 4.2376 -0.0206 -0.0003 6 6 5.7111 -0.0752 -0.0011 7 7 6.4275 1.0600 0.1206 8 8 6.2800 -1.1442 -0.1116 9 6 3.4776 -1.2034 -0.0059 10 7 4.1146 -2.4300 -0.0124 11 6 3.3827 -3.5818 0.0948 12 1 2.3075 -3.5321 0.1841 13 6 4.0227 -4.8143 0.0888 14 7 5.3319 -4.8748 -0.0193 15 14 3.0239 -6.3861 0.2344 16 1 1.5819 -6.0481 0.3423 17 1 3.2460 -7.2270 -0.9693 18 1 3.4498 -7.1328 1.4453 19 7 2.1537 -1.1481 -0.0056 20 1 -0.3632 -0.0050 1.0277 21 1 -0.3633 0.8925 -0.5095 22 1 -0.3633 -0.8875 -0.5180 23 1 1.6405 2.1382 0.0004 24 1 4.1211 2.1382 0.0098 25 1 5.9738 1.9128 0.2084 26 1 7.3969 1.0242 0.1197 27 1 5.0802 -2.4747 -0.0928 28 1 5.7790 -5.7356 -0.0231 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534513.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:28 Heat of formation + Delta-G solvation = -3.678748 kcal Electronic energy + Delta-G solvation = -14653.298923 eV Core-core repulsion = 12089.964286 eV Total energy + Delta-G solvation = -2563.334637 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61200 -37.83846 -35.46101 -33.26426 -32.35280 -31.38184 -29.67354 -27.08888 -24.79065 -22.21227 -21.46060 -20.20448 -17.73333 -17.33918 -16.29999 -16.09490 -14.81556 -14.46952 -14.15876 -14.08640 -13.50298 -13.37899 -13.12174 -12.13495 -12.05851 -11.86093 -11.60584 -11.34729 -11.25118 -10.52526 -10.37879 -10.24042 -9.24030 -9.15870 -8.97490 -8.59406 -8.24295 -7.01237 -6.66241 -3.78947 1.81380 2.50753 3.15127 3.15880 3.22572 3.77296 3.99592 4.20998 4.69843 4.94274 5.26813 5.45954 5.47501 5.81858 5.94782 6.11197 6.17690 6.29773 6.58455 6.71343 6.96052 7.10686 7.30132 7.32371 7.57209 7.91621 7.97221 8.64845 8.93749 9.04188 9.30501 9.83309 10.45965 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.010949 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.630821 B = 2556.588441 C = 3688.707259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.208 3.792 3 C -0.324 4.324 4 C 0.021 3.979 5 C -0.336 4.336 6 C 0.569 3.431 7 N -0.864 5.864 8 O -0.557 6.557 9 C 0.362 3.638 10 N -0.479 5.479 11 C -0.289 4.289 12 H 0.117 0.883 13 C 0.020 3.980 14 N -0.859 5.859 15 Si 0.941 3.059 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 N -0.538 5.538 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.394 0.606 26 H 0.394 0.606 27 H 0.429 0.571 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 9.729 0.500 10.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.053 3.947 3 C -0.350 4.350 4 C -0.004 4.004 5 C -0.350 4.350 6 C 0.361 3.639 7 N -0.428 5.428 8 O -0.437 6.437 9 C 0.113 3.887 10 N -0.088 5.088 11 C -0.421 4.421 12 H 0.135 0.865 13 C -0.187 4.187 14 N -0.493 5.493 15 Si 0.766 3.234 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.203 1.203 19 N -0.257 5.257 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.222 0.778 26 H 0.224 0.776 27 H 0.279 0.721 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.420 7.553 0.415 8.302 hybrid contribution 0.756 0.551 0.081 0.939 sum -2.664 8.105 0.496 8.546 Atomic orbital electron populations 1.20660 0.90555 1.02376 1.02173 1.20832 0.95468 0.88237 0.90144 1.20842 0.94028 0.97746 1.22418 1.20972 0.94286 0.94970 0.90204 1.19241 0.91494 0.93977 1.30279 1.18205 0.87444 0.83284 0.74931 1.43625 1.09994 1.09382 1.79761 1.90533 1.72109 1.28677 1.52367 1.17835 0.87577 0.85220 0.98051 1.42207 1.12018 1.01679 1.52878 1.20307 0.94271 0.82997 1.44500 0.86506 1.25669 0.96039 1.00503 0.96504 1.69786 1.07998 1.27604 1.43864 0.85628 0.79844 0.79822 0.78119 1.18570 1.20259 1.20279 1.66984 1.07918 1.28430 1.22326 0.91134 0.91532 0.91109 0.87112 0.87180 0.77768 0.77645 0.72079 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.16 36.01 0.37 -1.13 15 2 C 0.21 4.10 6.78 -82.53 -0.56 3.54 15 3 C -0.32 -5.75 9.71 -39.46 -0.38 -6.13 15 4 C 0.02 0.38 9.63 -38.89 -0.37 0.01 15 5 C -0.34 -7.45 5.91 -104.61 -0.62 -8.07 15 6 C 0.57 12.22 8.03 -12.51 -0.10 12.12 15 7 N -0.86 -12.94 8.83 30.44 0.27 -12.67 15 8 O -0.56 -14.43 14.51 5.28 0.08 -14.36 15 9 C 0.36 9.31 7.44 -155.13 -1.15 8.16 15 10 N -0.48 -13.54 5.29 -10.95 -0.06 -13.60 15 11 C -0.29 -8.14 9.70 -15.06 -0.15 -8.28 15 12 H 0.12 3.24 7.09 -52.48 -0.37 2.86 15 13 C 0.02 0.54 5.50 -17.45 -0.10 0.45 15 14 N -0.86 -24.48 13.05 55.49 0.72 -23.76 15 15 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 15 16 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 19 N -0.54 -12.96 8.99 -8.41 -0.08 -13.04 15 20 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.07 0.80 8.07 -51.93 -0.42 0.38 15 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.11 1.60 8.06 -52.49 -0.42 1.17 15 24 H 0.11 1.48 6.55 -52.49 -0.34 1.13 15 25 H 0.39 4.56 6.96 -40.82 -0.28 4.28 15 26 H 0.39 5.16 8.93 -40.82 -0.36 4.79 15 27 H 0.43 12.68 4.40 -40.91 -0.18 12.50 15 28 H 0.28 7.32 8.31 -40.82 -0.34 6.98 15 LS Contribution 249.04 15.07 3.75 3.75 Total: -1.00 -32.66 249.04 -5.77 -38.43 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -2.37 Total: 19.06 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.07 Total: 0.67 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.86 Total: -63.07 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.66 -5.77 -38.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534513.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.752 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds