Wall clock time and date at job start Sun Mar 29 2020 21:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47016 * 2 1 4 4 H 1.08999 * 109.47130 * 304.99635 * 3 2 1 5 5 C 1.52998 * 109.47190 * 184.99939 * 3 2 1 6 6 N 1.46493 * 109.47489 * 64.99658 * 3 2 1 7 7 C 1.38088 * 120.00166 * 205.00459 * 6 3 2 8 8 N 1.32267 * 119.90453 * 359.97262 * 7 6 3 9 9 C 1.31971 * 121.86271 * 179.68155 * 8 7 6 10 10 C 1.38683 * 121.44960 * 0.64140 * 9 8 7 11 11 C 1.38010 * 119.62321 * 359.39869 * 10 9 8 12 12 C 1.40999 * 118.28601 * 0.27326 * 11 10 9 13 13 C 1.41010 * 120.70943 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00239 * 204.89491 * 13 12 11 15 15 C 1.39953 * 119.99699 * 24.89911 * 13 12 11 16 16 N 1.30868 * 120.00061 * 14.50787 * 15 13 12 17 17 Si 1.86806 * 119.99768 * 194.50590 * 15 13 12 18 18 H 1.48504 * 109.46925 * 90.00010 * 17 15 13 19 19 H 1.48501 * 109.46810 * 209.99883 * 17 15 13 20 20 H 1.48500 * 109.47363 * 330.00149 * 17 15 13 21 21 H 1.08997 * 109.47281 * 300.00141 * 1 2 3 22 22 H 1.09004 * 109.46787 * 60.00522 * 1 2 3 23 23 H 1.08999 * 109.46991 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47803 * 239.99912 * 2 1 3 25 25 H 1.09004 * 109.46787 * 119.99478 * 2 1 3 26 26 H 1.09001 * 109.47291 * 59.99498 * 5 3 2 27 27 H 1.08999 * 109.47168 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.47286 * 299.99703 * 5 3 2 29 29 H 0.97003 * 119.99618 * 24.99872 * 6 3 2 30 30 H 1.08003 * 119.27760 * 180.31176 * 9 8 7 31 31 H 1.08001 * 120.18605 * 179.66896 * 10 9 8 32 32 H 1.08005 * 120.85657 * 180.29893 * 11 10 9 33 33 H 0.97000 * 119.99483 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0976 1.2517 7 6 1.5223 3.4714 1.3005 8 7 1.7487 4.1942 0.2162 9 6 1.6299 5.5086 0.2177 10 6 1.2728 6.2015 1.3647 11 6 1.0228 5.5073 2.5310 12 6 1.1473 4.1030 2.5125 13 6 0.9033 3.3430 3.6750 14 1 1.3634 2.3730 3.7925 15 6 0.0648 3.8458 4.6764 16 7 -0.7110 4.8698 4.4272 17 14 0.0531 3.0550 6.3688 18 1 1.0658 3.7157 7.2309 19 1 -1.2924 3.2096 6.9780 20 1 0.3765 1.6111 6.2428 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.8532 0.9570 -1.0570 27 1 3.9280 2.4721 -0.1262 28 1 3.9994 0.9054 0.7162 29 1 1.4870 1.5661 2.0462 30 1 1.8199 6.0571 -0.6930 31 1 1.1867 7.2779 1.3442 32 1 0.7387 6.0264 3.4345 33 1 -1.2919 5.2184 5.1215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167999349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:19 Heat of formation + Delta-G solvation = -0.710656 kcal Electronic energy + Delta-G solvation = -14947.191762 eV Core-core repulsion = 12585.244836 eV Total energy + Delta-G solvation = -2361.946925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37608 -37.80611 -35.80646 -33.67475 -32.26209 -30.91195 -29.43940 -27.20977 -24.62158 -23.56257 -22.62934 -21.17662 -19.12576 -18.32404 -17.26036 -16.59564 -15.71890 -15.39774 -15.05386 -14.96775 -14.38631 -14.19590 -14.15683 -13.75329 -13.21325 -13.11503 -12.98062 -12.67929 -12.52613 -12.21675 -12.13997 -11.82276 -11.62678 -11.38552 -11.14254 -10.65044 -9.95229 -9.76045 -8.61024 -8.25822 -6.13412 0.95033 1.25935 1.40619 1.52582 1.54336 2.22815 2.82610 2.90076 3.85065 3.97173 4.23586 4.28715 4.39305 4.62105 4.65309 4.80376 4.86606 4.89983 4.96255 5.06357 5.11328 5.13502 5.24364 5.32405 5.39588 5.44606 5.53678 5.85242 5.94812 6.12959 6.45946 6.80371 6.89471 6.95970 7.20938 7.97700 8.40947 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.010884 C = 0.008174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.302359 B = 2572.046673 C = 3424.681327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.156 3.844 4 H 0.057 0.943 5 C -0.151 4.151 6 N -0.717 5.717 7 C 0.304 3.696 8 N -0.543 5.543 9 C 0.000 4.000 10 C -0.203 4.203 11 C -0.151 4.151 12 C -0.005 4.005 13 C -0.477 4.477 14 H 0.081 0.919 15 C 0.031 3.969 16 N -0.834 5.834 17 Si 0.981 3.019 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.254 1.254 21 H 0.035 0.965 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.401 0.599 30 H 0.147 0.853 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -7.500 -3.087 8.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.051 3.949 4 H 0.075 0.925 5 C -0.210 4.210 6 N -0.355 5.355 7 C 0.065 3.935 8 N -0.261 5.261 9 C -0.153 4.153 10 C -0.226 4.226 11 C -0.178 4.178 12 C -0.012 4.012 13 C -0.509 4.509 14 H 0.099 0.901 15 C -0.182 4.182 16 N -0.462 5.462 17 Si 0.803 3.197 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.177 1.177 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.237 0.763 30 H 0.164 0.836 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.880 -7.768 -3.959 9.182 hybrid contribution -0.557 0.606 1.843 2.018 sum 2.323 -7.162 -2.117 7.821 Atomic orbital electron populations 1.21708 0.96087 1.01690 1.01010 1.21773 0.95918 0.94551 1.03575 1.20792 0.94264 0.93047 0.86846 0.92501 1.22107 0.96213 1.00680 1.01972 1.43970 1.77291 1.01541 1.12707 1.18765 0.99507 0.86097 0.89105 1.66687 1.21833 1.08414 1.29178 1.21924 1.06324 0.89224 0.97840 1.21638 1.06256 0.99843 0.94859 1.21429 1.04731 0.93821 0.97802 1.18321 0.96783 0.93282 0.92837 1.19395 1.25707 1.04183 1.01598 0.90140 1.26675 0.92640 0.95062 1.03815 1.69883 1.18129 1.22712 1.35442 0.85209 0.78199 0.79719 0.76618 1.19231 1.19866 1.17748 0.94620 0.93645 0.91009 0.88725 0.91074 0.90335 0.95105 0.92751 0.76261 0.83563 0.86524 0.87151 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.80 71.98 0.71 -3.31 16 2 C -0.12 -3.07 5.47 30.59 0.17 -2.90 16 3 C 0.16 5.24 2.58 44.99 0.12 5.36 16 4 H 0.06 2.16 7.53 -2.39 -0.02 2.14 16 5 C -0.15 -4.60 9.50 71.98 0.68 -3.92 16 6 N -0.72 -29.68 4.58 -323.15 -1.48 -31.16 16 7 C 0.30 15.17 7.49 134.06 1.00 16.18 16 8 N -0.54 -26.53 9.17 -191.44 -1.76 -28.29 16 9 C 0.00 -0.01 11.17 84.78 0.95 0.94 16 10 C -0.20 -9.83 10.08 22.32 0.22 -9.61 16 11 C -0.15 -8.19 8.79 22.89 0.20 -7.98 16 12 C -0.01 -0.28 5.60 -21.06 -0.12 -0.39 16 13 C -0.48 -24.86 8.54 23.37 0.20 -24.66 16 14 H 0.08 3.92 6.67 -2.91 -0.02 3.90 16 15 C 0.03 1.56 5.23 85.25 0.45 2.01 16 16 N -0.83 -43.86 10.83 21.83 0.24 -43.62 16 17 Si 0.98 37.85 29.58 68.60 2.03 39.88 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 20 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 21 H 0.03 1.15 7.75 -2.39 -0.02 1.13 16 22 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 29 H 0.40 16.17 6.80 -92.71 -0.63 15.54 16 30 H 0.15 5.78 8.06 -2.91 -0.02 5.76 16 31 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 32 H 0.11 6.21 6.17 -2.91 -0.02 6.19 16 33 H 0.28 13.63 8.30 -92.71 -0.77 12.87 16 Total: -1.00 -59.83 276.06 4.07 -55.76 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.46 Total: 35.73 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 4.58 Total: -28.30 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -3.00 Total: -103.07 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -59.83 4.07 -55.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167999349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.048 kcal (2) G-P(sol) polarization free energy of solvation -59.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds