Wall clock time and date at job start Sun Mar 29 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99660 * 2 1 4 4 H 1.48504 * 109.46971 * 270.00359 * 3 2 1 5 5 H 1.48499 * 109.47458 * 30.00178 * 3 2 1 6 6 H 1.48500 * 109.47063 * 150.00690 * 3 2 1 7 7 C 1.37875 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99754 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99892 * 359.97438 * 7 2 1 10 10 O 1.42098 * 106.40017 * 66.46065 * 9 7 2 11 11 O 1.42106 * 106.40382 * 293.54367 * 9 7 2 12 12 N 1.65592 * 107.21979 * 180.02562 * 9 7 2 13 13 C 1.46497 * 120.00050 * 64.99917 * 12 9 7 14 14 C 1.53001 * 109.47395 * 165.00069 * 13 12 9 15 15 C 1.54037 * 113.81449 * 86.49185 * 14 13 12 16 16 O 1.44573 * 85.38193 * 136.86604 * 15 14 13 17 17 C 1.44177 * 93.32946 * 335.80455 * 16 15 14 18 18 H 0.97002 * 120.00618 * 359.97438 * 1 2 3 19 19 H 0.96998 * 120.00076 * 245.00293 * 12 9 7 20 20 H 1.08997 * 109.47404 * 45.00207 * 13 12 9 21 21 H 1.09004 * 109.47484 * 285.00066 * 13 12 9 22 22 H 1.09002 * 112.99772 * 314.66930 * 14 13 12 23 23 H 1.08998 * 113.86554 * 251.07302 * 15 14 13 24 24 H 1.09005 * 113.86612 * 22.78379 * 15 14 13 25 25 H 1.09001 * 113.86262 * 270.04398 * 17 16 15 26 26 H 1.08999 * 113.98669 * 138.35214 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2500 11 8 0.4519 -2.7956 1.2494 12 7 2.2484 -3.9353 -0.0005 13 6 3.1394 -4.1087 1.1493 14 6 3.8048 -5.4845 1.0760 15 6 5.0944 -5.5077 0.2338 16 8 5.6370 -6.3197 1.2998 17 6 4.7142 -5.8006 2.2785 18 1 -0.4851 0.8400 0.0004 19 1 2.3173 -4.5324 -0.7619 20 1 2.5624 -4.0329 2.0709 21 1 3.9055 -3.3335 1.1355 22 1 3.1050 -6.2836 0.8314 23 1 4.9918 -6.0337 -0.7153 24 1 5.5734 -4.5336 0.1339 25 1 5.0774 -4.9157 2.8012 26 1 4.3094 -6.5570 2.9508 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933433.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:01 Heat of formation + Delta-G solvation = -110.384521 kcal Electronic energy + Delta-G solvation = -13447.759219 eV Core-core repulsion = 10847.115578 eV Total energy + Delta-G solvation = -2600.643641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 221.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26432 -35.27524 -34.61013 -33.95887 -33.08517 -29.76318 -26.51046 -26.14733 -24.24665 -20.26649 -18.93397 -17.46340 -16.56338 -16.34095 -15.88164 -15.50774 -14.73427 -14.55227 -14.05820 -13.31393 -13.28648 -12.67828 -12.03073 -11.85401 -11.39414 -11.23154 -11.16831 -10.72349 -10.61176 -10.30238 -10.20346 -10.08498 -9.64156 -9.26173 -9.04684 -8.51837 -6.71480 -5.33674 2.32414 3.05638 3.12648 3.18453 3.69256 4.03725 4.25023 4.62866 4.80966 4.85499 5.19188 5.33444 5.36868 5.50197 5.75604 5.78484 5.96493 6.08914 6.11651 6.25579 6.47991 6.79775 7.30531 7.86746 7.95707 8.87581 10.22714 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.038707 B = 0.008777 C = 0.007808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.207812 B = 3189.249352 C = 3585.270886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.715 3.285 10 O -1.007 7.007 11 O -1.008 7.008 12 N -1.137 6.137 13 C 0.129 3.871 14 C -0.163 4.163 15 C 0.038 3.962 16 O -0.388 6.388 17 C 0.041 3.959 18 H 0.291 0.709 19 H 0.402 0.598 20 H 0.080 0.920 21 H 0.064 0.936 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -6.577 2.083 10.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.997 6.997 11 O -0.997 6.997 12 N -0.892 5.892 13 C 0.001 3.999 14 C -0.183 4.183 15 C -0.039 4.039 16 O -0.307 6.307 17 C -0.036 4.036 18 H 0.101 0.899 19 H 0.232 0.768 20 H 0.098 0.902 21 H 0.082 0.918 22 H 0.126 0.874 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.512 -6.703 2.278 10.323 hybrid contribution 0.869 1.108 -0.376 1.458 sum 8.381 -5.595 1.902 10.255 Atomic orbital electron populations 1.69895 1.06786 1.30741 1.40046 1.24749 0.94461 1.00842 0.88509 0.86159 0.80116 0.80080 0.79150 1.19222 1.19987 1.18714 1.30542 1.06038 1.11912 1.66926 0.88030 1.00387 0.72076 0.73237 0.72803 1.93375 1.73087 1.87648 1.45629 1.93356 1.72881 1.87525 1.45980 1.55958 1.55701 1.51189 1.26314 1.21129 0.93547 0.95140 0.90056 1.24612 0.97875 0.99471 0.96341 1.24158 0.91343 0.95778 0.92604 1.89706 1.59103 1.60631 1.21273 1.23952 0.87899 0.99080 0.92694 0.89878 0.76801 0.90198 0.91815 0.87439 0.89150 0.89568 0.89682 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.66 13.19 55.43 0.73 -23.93 15 2 C 0.13 3.65 5.46 -17.82 -0.10 3.55 15 3 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 15 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 7 C -1.02 -27.49 9.72 30.60 0.30 -27.20 15 8 H 0.10 2.48 7.81 -52.49 -0.41 2.07 15 9 S 2.72 70.29 5.02 -107.50 -0.54 69.75 15 10 O -1.01 -29.10 18.02 -57.17 -1.03 -30.13 15 11 O -1.01 -28.89 17.49 -57.17 -1.00 -29.88 15 12 N -1.14 -21.39 6.00 -10.61 -0.06 -21.45 15 13 C 0.13 2.03 6.07 -4.04 -0.02 2.01 15 14 C -0.16 -2.03 4.01 -89.54 -0.36 -2.39 15 15 C 0.04 0.45 8.80 37.64 0.33 0.78 15 16 O -0.39 -5.19 12.47 -35.23 -0.44 -5.63 15 17 C 0.04 0.46 8.79 37.64 0.33 0.80 15 18 H 0.29 7.62 8.31 -40.82 -0.34 7.28 15 19 H 0.40 6.48 8.65 -34.46 -0.30 6.18 15 20 H 0.08 1.32 7.75 -51.93 -0.40 0.92 15 21 H 0.06 0.96 7.88 -51.93 -0.41 0.55 15 22 H 0.11 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.09 0.97 7.92 -51.93 -0.41 0.55 15 25 H 0.09 0.86 8.10 -51.93 -0.42 0.44 15 26 H 0.09 0.88 8.14 -51.93 -0.42 0.45 15 LS Contribution 246.73 15.07 3.72 3.72 Total: -1.00 -34.91 246.73 -5.92 -40.83 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -2.75 Total: 3.91 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 0.48 Total: -22.46 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.67 Total: -45.39 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -2.47 Total: -65.64 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 70.29 SS G_CDS: -0.54 Total: 69.75 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -34.91 -5.92 -40.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933433.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.558 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds