Wall clock time and date at job start Sun Mar 29 2020 22:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48496 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 300.00036 * 3 2 1 6 6 H 1.48507 * 109.47256 * 59.99880 * 3 2 1 7 7 C 1.37878 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99260 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40345 * 66.46537 * 9 7 2 11 11 O 1.42097 * 106.40526 * 293.53984 * 9 7 2 12 12 N 1.65608 * 107.21632 * 179.97438 * 9 7 2 13 13 C 1.46497 * 119.99652 * 65.00196 * 12 9 7 14 14 H 1.08993 * 112.85429 * 15.33034 * 13 12 9 15 15 C 1.53779 * 113.61387 * 146.52847 * 13 12 9 16 16 C 1.53783 * 87.08244 * 139.97829 * 15 13 12 17 17 H 1.08997 * 113.61414 * 89.20159 * 16 15 13 18 18 O 1.42903 * 113.61689 * 220.01985 * 16 15 13 19 19 C 1.53781 * 113.61303 * 244.13559 * 13 12 9 20 20 H 0.96997 * 119.99891 * 0.02562 * 1 2 3 21 21 H 0.96997 * 120.00222 * 245.00273 * 12 9 7 22 22 H 1.09000 * 113.61983 * 254.52576 * 15 13 12 23 23 H 1.09003 * 113.61281 * 25.35025 * 15 13 12 24 24 H 0.96702 * 113.99946 * 179.97438 * 18 16 15 25 25 H 1.08995 * 113.61612 * 334.56858 * 19 13 12 26 26 H 1.09000 * 113.61664 * 105.47190 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9354 -0.0019 13 6 3.1403 -4.1093 1.1472 14 1 2.8022 -3.5685 2.0311 15 6 3.5073 -5.5764 1.4256 16 6 4.9309 -5.0805 1.7297 17 1 5.0841 -4.8063 2.7734 18 8 5.9561 -5.9388 1.2252 19 6 4.6243 -3.8804 0.8153 20 1 -0.4850 0.8400 -0.0004 21 1 2.3167 -4.5321 -0.7636 22 1 2.9973 -5.9974 2.2920 23 1 3.4453 -6.2166 0.5455 24 1 6.8537 -5.6319 1.4131 25 1 4.8696 -4.0557 -0.2321 26 1 5.0146 -2.9341 1.1898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988574.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:07 Heat of formation + Delta-G solvation = -159.058723 kcal Electronic energy + Delta-G solvation = -13575.892015 eV Core-core repulsion = 10973.137702 eV Total energy + Delta-G solvation = -2602.754313 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 221.055 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24026 -37.38688 -36.37114 -36.13390 -35.17721 -32.99190 -28.25642 -26.61053 -24.62544 -21.19666 -20.67910 -19.47382 -18.49176 -18.18279 -17.07514 -16.71201 -15.96864 -15.91732 -15.45918 -14.76402 -13.99610 -13.93087 -13.39490 -13.26833 -13.06744 -13.01390 -12.53778 -12.47741 -12.33979 -12.27004 -12.03677 -11.50206 -11.25542 -10.92885 -10.67416 -10.10669 -8.74267 -7.46720 0.37202 1.34435 1.35610 1.53067 2.21841 2.59283 2.95175 3.43055 3.64888 3.66489 3.86417 3.94307 4.03282 4.42667 4.56303 4.86568 4.88207 4.90958 5.08085 5.17807 5.28861 5.57173 5.93054 6.38348 6.79869 6.98932 8.22478 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.036383 B = 0.009948 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.415878 B = 2813.923052 C = 3330.872368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.992 3.008 4 H -0.245 1.245 5 H -0.262 1.262 6 H -0.259 1.259 7 C -1.034 5.034 8 H 0.122 0.878 9 S 2.718 3.282 10 O -1.049 7.049 11 O -1.044 7.044 12 N -1.108 6.108 13 C 0.117 3.883 14 H 0.108 0.892 15 C -0.136 4.136 16 C 0.092 3.908 17 H 0.111 0.889 18 O -0.574 6.574 19 C -0.182 4.182 20 H 0.298 0.702 21 H 0.414 0.586 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.396 0.604 25 H 0.089 0.911 26 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.501 -5.393 3.689 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.811 3.189 4 H -0.168 1.168 5 H -0.187 1.187 6 H -0.183 1.183 7 C -1.168 5.168 8 H 0.140 0.860 9 S 2.819 3.181 10 O -1.039 7.039 11 O -1.034 7.034 12 N -0.865 5.865 13 C 0.009 3.991 14 H 0.126 0.874 15 C -0.175 4.175 16 C 0.033 3.967 17 H 0.128 0.872 18 O -0.382 6.382 19 C -0.222 4.222 20 H 0.108 0.892 21 H 0.248 0.752 22 H 0.107 0.893 23 H 0.110 0.890 24 H 0.246 0.754 25 H 0.108 0.892 26 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.827 -5.701 3.647 12.768 hybrid contribution 0.813 1.154 -0.328 1.449 sum 11.640 -4.547 3.319 12.930 Atomic orbital electron populations 1.70005 1.08842 1.32241 1.41628 1.26046 0.95358 1.05473 0.87585 0.85071 0.79575 0.75055 0.79247 1.16816 1.18694 1.18344 1.30908 1.07196 1.12283 1.66408 0.85958 0.99936 0.72633 0.74120 0.71433 1.93307 1.75077 1.88479 1.47020 1.93303 1.74606 1.88315 1.47148 1.55307 1.54476 1.49320 1.27380 1.22109 0.89614 0.98651 0.88699 0.87426 1.23488 0.94985 0.95619 1.03420 1.23116 0.87222 0.89302 0.97110 0.87181 1.86463 1.19020 1.51319 1.81384 1.24258 0.95526 1.00357 1.02027 0.89168 0.75179 0.89280 0.88999 0.75351 0.89201 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.42 13.19 21.45 0.28 -53.14 15 2 C 0.07 3.75 5.46 84.65 0.46 4.21 15 3 Si 0.99 40.75 29.54 68.60 2.03 42.77 15 4 H -0.25 -9.27 7.11 99.48 0.71 -8.56 15 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 7 C -1.03 -56.07 9.72 67.73 0.66 -55.42 15 8 H 0.12 5.92 7.81 -2.91 -0.02 5.90 15 9 S 2.72 145.94 4.99 -56.49 -0.28 145.66 15 10 O -1.05 -63.42 18.02 -128.00 -2.31 -65.73 15 11 O -1.04 -62.18 17.53 -128.00 -2.24 -64.42 15 12 N -1.11 -43.56 5.79 -167.21 -0.97 -44.53 15 13 C 0.12 3.81 4.42 45.52 0.20 4.01 15 14 H 0.11 3.71 7.76 -2.39 -0.02 3.70 15 15 C -0.14 -3.50 7.69 31.12 0.24 -3.26 15 16 C 0.09 1.96 5.21 31.18 0.16 2.13 15 17 H 0.11 1.82 8.14 -2.39 -0.02 1.80 15 18 O -0.57 -11.62 13.67 -148.98 -2.04 -13.65 15 19 C -0.18 -4.76 7.73 31.18 0.24 -4.52 15 20 H 0.30 15.93 8.31 -92.71 -0.77 15.16 15 21 H 0.41 14.26 8.93 -96.74 -0.86 13.40 15 22 H 0.09 2.07 8.14 -2.39 -0.02 2.06 15 23 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.40 4.24 9.12 -74.06 -0.68 3.57 15 25 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 Total: -1.00 -77.18 246.94 -3.89 -81.07 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.33 Total: 24.82 kcal Atomic # 6 Polarization: -54.81 SS G_CDS: 1.96 Total: -52.84 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -0.69 Total: -97.67 kcal Atomic # 8 Polarization: -137.22 SS G_CDS: -6.59 Total: -143.80 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 145.94 SS G_CDS: -0.28 Total: 145.66 kcal Total: -77.18 -3.89 -81.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988574.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.992 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds