Wall clock time and date at job start Sun Mar 29 2020 21:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 C 1.53004 * 109.47259 * 119.99312 * 2 1 3 5 5 H 1.08997 * 109.46956 * 300.00374 * 4 2 1 6 6 O 1.42901 * 109.46881 * 60.00349 * 4 2 1 7 7 C 1.34934 * 116.99894 * 269.99957 * 6 4 2 8 8 H 1.08004 * 119.99676 * 359.72930 * 7 6 4 9 9 C 1.38628 * 119.99943 * 179.97438 * 7 6 4 10 10 N 1.31584 * 120.00142 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00025 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47174 * 89.99691 * 11 9 7 13 13 H 1.48501 * 109.47062 * 209.99642 * 11 9 7 14 14 H 1.48504 * 109.46913 * 329.99441 * 11 9 7 15 15 C 1.50697 * 109.47386 * 180.02562 * 4 2 1 16 16 C 1.38239 * 119.99901 * 279.72891 * 15 4 2 17 17 C 1.38235 * 119.99666 * 179.78455 * 16 15 4 18 18 C 1.38238 * 120.00028 * 0.44674 * 17 16 15 19 19 C 1.38229 * 120.00178 * 359.80793 * 18 17 16 20 20 C 1.38233 * 119.99892 * 99.99957 * 15 4 2 21 21 H 1.09003 * 109.47824 * 300.00398 * 1 2 3 22 22 H 1.09002 * 109.47402 * 60.00740 * 1 2 3 23 23 H 1.09008 * 109.47164 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47442 * 239.99388 * 2 1 3 25 25 H 1.09001 * 109.47208 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46619 * 299.99387 * 3 2 1 27 27 H 1.08997 * 109.47473 * 59.99407 * 3 2 1 28 28 H 0.96996 * 120.00435 * 180.02562 * 10 9 7 29 29 H 1.07999 * 120.00155 * 359.97438 * 16 15 4 30 30 H 1.07999 * 120.00021 * 180.27480 * 17 16 15 31 31 H 1.08004 * 119.99656 * 179.82979 * 18 17 16 32 32 H 1.08002 * 120.00079 * 180.02562 * 19 18 17 33 33 H 1.08002 * 120.00409 * 359.97438 * 20 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6766 -0.2072 2.1392 6 8 1.5637 -2.0684 1.2494 7 6 0.3778 -2.2989 1.8506 8 1 -0.1636 -1.4835 2.3072 9 6 -0.1431 -3.5831 1.8865 10 7 -1.2992 -3.8080 2.4731 11 14 0.7970 -4.9946 1.1032 12 1 1.7057 -5.6022 2.1083 13 1 -0.1621 -6.0198 0.6192 14 1 1.5946 -4.4837 -0.0405 15 6 3.5469 -0.7206 1.2497 16 6 4.2386 -1.6410 0.4846 17 6 5.6210 -1.6376 0.4815 18 6 6.3116 -0.7198 1.2506 19 6 5.6200 0.1972 2.0197 20 6 4.2376 0.1967 2.0194 21 1 -0.3635 0.5139 0.8899 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6765 1.9565 0.8899 28 1 -1.6636 -4.7065 2.4986 29 1 3.6990 -2.3608 -0.1130 30 1 6.1614 -2.3539 -0.1196 31 1 7.3917 -0.7190 1.2503 32 1 6.1596 0.9146 2.6202 33 1 3.6972 0.9133 2.6202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379827.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:35 Heat of formation + Delta-G solvation = -41.180836 kcal Electronic energy + Delta-G solvation = -15071.755303 eV Core-core repulsion = 12675.760708 eV Total energy + Delta-G solvation = -2395.994595 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63063 -38.66578 -35.72905 -33.93240 -32.14799 -31.72215 -27.86591 -27.62739 -25.50841 -23.42972 -22.47714 -20.90424 -19.78260 -17.87888 -17.43625 -16.27562 -16.00904 -15.90486 -15.38212 -14.98777 -14.55401 -14.31082 -14.15833 -13.63435 -13.34721 -13.28564 -13.04883 -12.91751 -12.69366 -12.23329 -12.03588 -11.96389 -11.85144 -11.47261 -11.24734 -11.22420 -10.31326 -9.75267 -9.54926 -8.22595 -5.88402 0.49283 0.56334 1.36091 1.38746 1.56863 2.44126 2.92009 3.09975 3.34817 3.92279 4.06290 4.11483 4.17905 4.24517 4.33946 4.45005 4.62865 4.75516 4.79485 4.83596 4.86855 5.01510 5.07869 5.19041 5.22405 5.22768 5.43257 5.58781 5.59732 5.64817 5.68399 5.84493 6.17981 6.20468 7.17485 7.86644 8.93337 Molecular weight = 220.12amu Principal moments of inertia in cm(-1) A = 0.026258 B = 0.010639 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.092154 B = 2631.134785 C = 3289.969728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.133 4.133 4 C 0.142 3.858 5 H 0.041 0.959 6 O -0.335 6.335 7 C -0.329 4.329 8 H 0.054 0.946 9 C -0.017 4.017 10 N -0.955 5.955 11 Si 0.963 3.037 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.263 1.263 15 C -0.087 4.087 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.122 4.122 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.270 0.730 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.126 9.053 -4.656 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.190 4.190 4 C 0.084 3.916 5 H 0.059 0.941 6 O -0.251 6.251 7 C -0.408 4.408 8 H 0.072 0.928 9 C -0.209 4.209 10 N -0.604 5.604 11 Si 0.789 3.211 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.187 1.187 15 C -0.087 4.087 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.140 4.140 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.144 8.802 -4.723 17.316 hybrid contribution -0.596 -0.753 0.047 0.962 sum 13.548 8.049 -4.676 16.438 Atomic orbital electron populations 1.21765 0.95383 1.01628 1.00792 1.21530 0.95949 0.97235 0.97634 1.21743 1.01156 0.93809 1.02305 1.20850 0.89975 0.83938 0.96879 0.94068 1.85220 1.36728 1.25725 1.77441 1.20280 0.95023 0.94788 1.30658 0.92833 1.25037 0.96905 0.99803 0.99158 1.69784 1.19913 1.22538 1.48144 0.85284 0.78040 0.78446 0.79348 1.20484 1.20923 1.18704 1.19925 0.94064 0.96973 0.97754 1.21053 0.95184 0.98125 0.99483 1.21405 0.93176 0.99844 1.00142 1.21485 1.01176 0.95071 0.96359 1.21427 0.93233 0.99612 0.99457 1.21162 0.95344 0.98810 0.98644 0.94067 0.91562 0.93882 0.92045 0.92075 0.91279 0.92523 0.92045 0.88018 0.84330 0.83014 0.83035 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.31 71.98 0.60 -4.82 16 2 C -0.10 -3.83 2.71 -10.79 -0.03 -3.86 16 3 C -0.13 -3.72 8.78 71.98 0.63 -3.08 16 4 C 0.14 5.98 2.14 29.85 0.06 6.04 16 5 H 0.04 1.81 7.66 -2.39 -0.02 1.79 16 6 O -0.34 -17.60 7.45 -82.04 -0.61 -18.21 16 7 C -0.33 -19.38 7.91 67.91 0.54 -18.84 16 8 H 0.05 3.37 7.63 -2.91 -0.02 3.34 16 9 C -0.02 -1.01 5.49 84.82 0.47 -0.55 16 10 N -0.96 -60.44 13.96 21.61 0.30 -60.14 16 11 Si 0.96 48.74 28.62 68.60 1.96 50.70 16 12 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 13 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 14 H -0.26 -13.03 7.11 99.48 0.71 -12.33 16 15 C -0.09 -3.15 4.07 -19.87 -0.08 -3.23 16 16 C -0.12 -4.24 9.36 22.27 0.21 -4.03 16 17 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 18 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 19 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 20 C -0.12 -3.57 8.71 22.27 0.19 -3.37 16 21 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 23 H 0.04 2.03 6.27 -2.38 -0.01 2.02 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 1.62 6.64 -2.39 -0.02 1.61 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.27 16.06 8.31 -92.71 -0.77 15.28 16 29 H 0.10 3.98 7.77 -2.91 -0.02 3.95 16 30 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.13 3.39 8.04 -2.91 -0.02 3.37 16 Total: -1.00 -67.93 276.16 5.98 -61.95 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.07 Total: 9.84 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 3.26 Total: -44.15 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.30 Total: -60.14 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.61 Total: -18.21 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 1.96 Total: 50.70 kcal Total: -67.93 5.98 -61.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379827.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.768 kcal (2) G-P(sol) polarization free energy of solvation -67.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds