Wall clock time and date at job start Sun Mar 29 2020 22:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47140 * 158.06542 * 3 2 1 5 5 C 1.36853 * 119.99918 * 264.53361 * 4 3 2 6 6 H 1.08004 * 119.99803 * 140.86677 * 5 4 3 7 7 C 1.39024 * 120.00224 * 320.86070 * 5 4 3 8 8 N 1.31382 * 120.00453 * 161.67208 * 7 5 4 9 9 Si 1.86806 * 119.99695 * 341.67654 * 7 5 4 10 10 H 1.48500 * 109.47282 * 90.27196 * 9 7 5 11 11 H 1.48506 * 109.46794 * 210.26727 * 9 7 5 12 12 H 1.48499 * 109.47141 * 330.26400 * 9 7 5 13 13 C 1.34774 * 119.99664 * 84.52856 * 4 3 2 14 14 O 1.21734 * 119.99851 * 184.04700 * 13 4 3 15 15 C 1.46582 * 120.00112 * 4.04439 * 13 4 3 16 16 C 1.36472 * 126.64975 * 175.12964 * 15 13 4 17 17 N 1.33672 * 107.44150 * 179.75966 * 16 15 13 18 18 C 1.30626 * 109.00801 * 0.24157 * 17 16 15 19 19 O 1.33702 * 109.17271 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.47494 * 38.06460 * 3 2 1 21 21 H 1.09001 * 109.47140 * 278.06237 * 3 2 1 22 22 H 0.97000 * 120.00335 * 180.02562 * 8 7 5 23 23 H 1.07999 * 126.28152 * 0.02562 * 16 15 13 24 24 H 1.07999 * 125.41082 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.2822 -0.5160 5 6 3.4302 1.4051 -1.8373 6 1 3.1846 2.3092 -2.3746 7 6 4.0862 0.3663 -2.4879 8 7 4.0913 0.3124 -3.8006 9 14 4.9602 -0.9531 -1.4956 10 1 4.0177 -2.0650 -1.2118 11 1 6.1168 -1.4703 -2.2703 12 1 5.4412 -0.3730 -0.2160 13 6 3.2149 2.3399 0.3107 14 8 3.5495 3.4235 -0.1318 15 6 2.9416 2.1856 1.7425 16 6 3.1078 3.1334 2.7103 17 7 2.7397 2.5871 3.8734 18 6 2.3629 1.3540 3.6640 19 8 2.4781 1.0749 2.3615 20 1 2.9717 -0.8082 -0.6336 21 1 2.9713 -0.1433 1.0175 22 1 4.5487 -0.4126 -4.2545 23 1 3.4665 4.1413 2.5629 24 1 2.0131 0.6691 4.4223 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335904311.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:26 Heat of formation + Delta-G solvation = 22.641404 kcal Electronic energy + Delta-G solvation = -14709.098208 eV Core-core repulsion = 12011.071804 eV Total energy + Delta-G solvation = -2698.026404 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.39660 -40.74105 -38.09928 -36.70055 -35.82553 -34.27917 -31.51100 -29.59128 -27.54863 -24.45600 -23.62986 -21.62807 -20.49917 -19.09045 -18.49799 -18.03586 -17.54121 -17.27995 -16.01491 -15.73458 -15.40389 -15.21299 -14.82480 -14.55212 -14.23408 -14.14660 -13.66352 -13.20325 -12.82571 -12.51299 -12.26730 -11.87142 -11.71807 -11.33535 -10.92238 -10.24546 -10.01311 -8.57359 -6.31843 -0.13055 1.20415 1.32591 1.35731 1.47934 1.52025 1.55971 1.66300 2.07398 2.15610 2.61177 2.73703 3.09347 3.32531 3.68425 3.95246 3.97484 4.16809 4.53040 4.71952 5.32844 5.34737 5.89903 6.21872 6.37947 6.56957 6.65627 6.98894 7.43685 8.57722 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.031677 B = 0.011539 C = 0.010681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.703083 B = 2425.966339 C = 2620.797887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C 0.172 3.828 4 N -0.453 5.453 5 C -0.348 4.348 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.895 5.895 9 Si 0.928 3.072 10 H -0.220 1.220 11 H -0.278 1.278 12 H -0.239 1.239 13 C 0.550 3.450 14 O -0.570 6.570 15 C -0.112 4.112 16 C 0.043 3.957 17 N -0.517 5.517 18 C 0.213 3.787 19 O -0.197 6.197 20 H 0.126 0.874 21 H 0.160 0.840 22 H 0.287 0.713 23 H 0.198 0.802 24 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 -6.392 14.500 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.096 4.096 3 C 0.047 3.953 4 N -0.174 5.174 5 C -0.475 4.475 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.530 5.530 9 Si 0.748 3.252 10 H -0.144 1.144 11 H -0.204 1.204 12 H -0.162 1.162 13 C 0.340 3.660 14 O -0.453 6.453 15 C -0.167 4.167 16 C -0.099 4.099 17 N -0.244 5.244 18 C -0.011 4.011 19 O -0.084 6.084 20 H 0.143 0.857 21 H 0.177 0.823 22 H 0.097 0.903 23 H 0.214 0.786 24 H 0.324 0.676 Dipole moment (debyes) X Y Z Total from point charges -0.820 -5.698 14.607 15.701 hybrid contribution 0.718 -0.366 -1.120 1.380 sum -0.102 -6.064 13.487 14.788 Atomic orbital electron populations 1.81056 1.13665 1.08517 1.10514 1.29817 0.95577 0.92648 0.91535 1.20046 0.81019 0.89414 1.04771 1.43451 1.56180 1.09206 1.08527 1.18667 1.40132 1.05221 0.83446 0.92567 1.26281 0.95336 1.00457 0.96401 1.69791 1.39588 1.33857 1.09745 0.86169 0.79695 0.79052 0.80285 1.14407 1.20361 1.16226 1.16973 0.81222 0.85391 0.82442 1.90753 1.52154 1.26756 1.75598 1.23045 1.11349 0.87784 0.94563 1.23647 0.98937 1.00962 0.86333 1.70448 1.17617 1.08989 1.27381 1.29687 0.94706 0.94204 0.82532 1.84621 1.64065 1.36406 1.23319 0.85741 0.82349 0.90251 0.78551 0.67600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.18 18.54 20.00 0.37 -17.81 14 2 C 0.22 8.25 14.97 89.44 1.34 9.59 14 3 C 0.17 6.02 4.07 84.57 0.34 6.37 14 4 N -0.45 -20.53 2.14 -650.05 -1.39 -21.92 14 5 C -0.35 -18.89 9.38 84.10 0.79 -18.10 14 6 H 0.06 3.62 7.90 -2.91 -0.02 3.60 14 7 C 0.02 1.04 5.33 84.95 0.45 1.49 14 8 N -0.89 -49.18 13.96 21.68 0.30 -48.88 14 9 Si 0.93 34.69 25.03 68.60 1.72 36.41 14 10 H -0.22 -6.67 6.50 99.48 0.65 -6.02 14 11 H -0.28 -10.47 7.11 99.48 0.71 -9.76 14 12 H -0.24 -8.37 7.11 99.48 0.71 -7.66 14 13 C 0.55 24.74 7.53 86.42 0.65 25.39 14 14 O -0.57 -30.03 16.77 -4.46 -0.07 -30.10 14 15 C -0.11 -3.88 6.78 24.04 0.16 -3.71 14 16 C 0.04 1.34 11.67 84.00 0.98 2.32 14 17 N -0.52 -13.41 11.26 -314.95 -3.54 -16.95 14 18 C 0.21 4.04 13.21 130.42 1.72 5.76 14 19 O -0.20 -5.16 6.89 -7.45 -0.05 -5.21 14 20 H 0.13 4.21 3.33 -2.39 -0.01 4.20 14 21 H 0.16 4.27 5.27 -2.39 -0.01 4.25 14 22 H 0.29 14.30 8.31 -92.71 -0.77 13.53 14 23 H 0.20 5.73 8.06 -2.91 -0.02 5.71 14 24 H 0.31 1.56 8.06 -2.91 -0.02 1.54 14 Total: -1.00 -70.96 229.15 4.97 -65.99 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.20 Total: 9.37 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 6.44 Total: 29.11 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -4.26 Total: -105.56 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.13 Total: -35.32 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 1.72 Total: 36.41 kcal Total: -70.96 4.97 -65.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335904311.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.631 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds