Wall clock time and date at job start Sun Mar 29 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35790 * 120.00530 * 2 1 4 4 C 1.41509 * 120.00339 * 171.15472 * 3 2 1 5 5 C 1.38037 * 126.10787 * 139.75357 * 4 3 2 6 6 C 1.40288 * 106.52519 * 179.78725 * 5 4 3 7 7 C 1.35177 * 107.21299 * 0.35336 * 6 5 4 8 8 O 1.34041 * 109.04340 * 359.63907 * 7 6 5 9 9 C 1.41334 * 119.99769 * 179.97438 * 2 1 3 10 10 O 1.21847 * 120.00417 * 172.98185 * 9 2 1 11 11 N 1.34777 * 120.00414 * 352.99360 * 9 2 1 12 12 C 1.36737 * 120.00647 * 179.97438 * 11 9 2 13 13 H 1.08004 * 119.99492 * 359.97438 * 12 11 9 14 14 C 1.39072 * 120.00236 * 179.97438 * 12 11 9 15 15 N 1.31352 * 120.00054 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99678 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47340 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46769 * 120.00143 * 16 14 12 19 19 H 1.48502 * 109.46948 * 239.99618 * 16 14 12 20 20 H 1.09000 * 109.46676 * 89.99717 * 1 2 3 21 21 H 1.08998 * 109.47187 * 209.99986 * 1 2 3 22 22 H 1.09004 * 109.46357 * 330.00106 * 1 2 3 23 23 H 1.08007 * 119.99568 * 351.16092 * 3 2 1 24 24 H 1.08006 * 126.73887 * 0.02562 * 5 4 3 25 25 H 1.08007 * 126.39225 * 180.26092 * 6 5 4 26 26 H 1.08001 * 125.47724 * 179.90596 * 7 6 5 27 27 H 0.97003 * 119.99468 * 359.97438 * 11 9 2 28 28 H 0.96998 * 120.00146 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.1759 0.0000 4 6 3.5886 1.1832 0.1884 5 6 4.4951 1.9806 -0.4806 6 6 5.7623 1.6564 0.0266 7 6 5.5859 0.6918 0.9570 8 8 4.2787 0.4117 1.0542 9 6 2.2137 -1.2240 0.0005 10 8 3.4253 -1.2282 -0.1284 11 7 1.5474 -2.3868 0.1434 12 6 2.2309 -3.5711 0.1434 13 1 3.3048 -3.5747 0.0285 14 6 1.5433 -4.7709 0.2914 15 7 0.2373 -4.7664 0.4317 16 14 2.4772 -6.3887 0.2907 17 1 3.9279 -6.1228 0.1176 18 1 2.2524 -7.0905 1.5800 19 1 1.9934 -7.2390 -0.8266 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8901 0.5139 23 1 1.6557 2.1057 -0.1437 24 1 4.2722 2.7133 -1.2422 25 1 6.7033 2.0946 -0.2717 26 1 6.3714 0.2251 1.5329 27 1 0.5828 -2.3836 0.2463 28 1 -0.2422 -5.6032 0.5353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542735056.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:17 Heat of formation + Delta-G solvation = -2.652543 kcal Electronic energy + Delta-G solvation = -14691.443278 eV Core-core repulsion = 12095.860390 eV Total energy + Delta-G solvation = -2595.582889 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63678 -38.60040 -34.52727 -33.67124 -32.19337 -31.50374 -29.56383 -25.78395 -25.39213 -22.42606 -20.90282 -20.17268 -18.36768 -17.86071 -16.81113 -15.31112 -15.09755 -14.80336 -14.21528 -13.85511 -13.45142 -12.99304 -12.51168 -12.39181 -12.17039 -11.90492 -11.79957 -11.60606 -11.29843 -11.18428 -10.39700 -10.30682 -9.69021 -9.19884 -9.03947 -8.34566 -8.05181 -7.16134 -6.59974 -3.86033 1.31390 2.83258 3.12887 3.19952 3.27827 3.36141 3.95168 4.08764 4.37870 5.10817 5.27365 5.33132 5.55510 5.60734 5.69910 5.84239 5.98310 6.08166 6.19387 6.40285 6.47691 6.75615 6.85408 7.01464 7.24079 7.39970 7.94636 7.98386 8.52483 9.07390 9.43445 10.04705 10.56752 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035500 B = 0.008436 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.543255 B = 3318.436316 C = 3993.941654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.089 4.089 4 C 0.064 3.936 5 C -0.223 4.223 6 C -0.227 4.227 7 C -0.039 4.039 8 O -0.125 6.125 9 C 0.447 3.553 10 O -0.583 6.583 11 N -0.540 5.540 12 C -0.284 4.284 13 H 0.108 0.892 14 C 0.021 3.979 15 N -0.887 5.887 16 Si 0.934 3.066 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.140 0.860 24 H 0.138 0.862 25 H 0.136 0.864 26 H 0.188 0.812 27 H 0.393 0.607 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 8.956 0.323 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.012 3.988 5 C -0.243 4.243 6 C -0.246 4.246 7 C -0.110 4.110 8 O -0.018 6.018 9 C 0.238 3.762 10 O -0.470 6.470 11 N -0.175 5.175 12 C -0.414 4.414 13 H 0.126 0.874 14 C -0.183 4.183 15 N -0.526 5.526 16 Si 0.760 3.240 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.205 1.205 20 H 0.090 0.910 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.158 0.842 24 H 0.156 0.844 25 H 0.154 0.846 26 H 0.205 0.795 27 H 0.229 0.771 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.939 8.499 0.466 8.730 hybrid contribution -0.060 -0.813 -0.177 0.834 sum 1.879 7.686 0.289 7.918 Atomic orbital electron populations 1.20877 0.91489 1.02922 1.02485 1.21373 0.96093 0.94588 0.99623 1.20006 0.89250 0.97367 1.04503 1.19480 0.92491 0.91963 0.94836 1.21897 0.92365 1.05197 1.04831 1.21427 0.98397 1.02809 1.01980 1.23898 0.84335 0.99938 1.02812 1.84347 1.17543 1.49983 1.49905 1.16476 0.88213 0.84057 0.87490 1.90714 1.13322 1.86452 1.56519 1.42097 1.10116 1.05383 1.59908 1.19925 0.94425 0.82608 1.44487 0.87387 1.25418 0.95718 1.00204 0.96922 1.69591 1.06780 1.28887 1.47373 0.85722 0.79821 0.80515 0.77913 1.18972 1.20492 1.20508 0.90954 0.90854 0.91446 0.84245 0.84414 0.84604 0.79501 0.77116 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.71 36.01 0.35 -1.53 15 2 C -0.11 -2.26 5.89 -104.32 -0.61 -2.87 15 3 C -0.09 -1.63 9.58 -39.21 -0.38 -2.00 15 4 C 0.06 1.29 5.31 -38.41 -0.20 1.09 15 5 C -0.22 -4.02 10.90 -38.88 -0.42 -4.45 15 6 C -0.23 -3.88 10.87 -39.90 -0.43 -4.32 15 7 C -0.04 -0.72 12.06 29.64 0.36 -0.37 15 8 O -0.13 -2.79 7.85 -20.17 -0.16 -2.95 15 9 C 0.45 11.23 7.27 -15.08 -0.11 11.12 15 10 O -0.58 -16.40 12.02 -19.73 -0.24 -16.64 15 11 N -0.54 -14.02 5.21 -13.68 -0.07 -14.10 15 12 C -0.28 -7.93 9.67 -15.06 -0.15 -8.08 15 13 H 0.11 3.17 7.15 -52.48 -0.38 2.80 15 14 C 0.02 0.55 5.50 -17.45 -0.10 0.45 15 15 N -0.89 -23.56 13.05 55.50 0.72 -22.84 15 16 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 15 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 18 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.07 1.21 6.34 -51.93 -0.33 0.88 15 22 H 0.07 0.84 8.08 -51.93 -0.42 0.42 15 23 H 0.14 1.93 8.06 -52.48 -0.42 1.50 15 24 H 0.14 2.08 8.06 -52.48 -0.42 1.66 15 25 H 0.14 1.88 8.06 -52.48 -0.42 1.46 15 26 H 0.19 2.73 8.06 -52.49 -0.42 2.30 15 27 H 0.39 9.63 5.73 -40.82 -0.23 9.40 15 28 H 0.28 6.85 8.31 -40.82 -0.34 6.51 15 LS Contribution 251.75 15.07 3.79 3.79 Total: -1.00 -32.04 251.75 -5.28 -37.31 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -2.61 Total: 10.71 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.70 Total: -10.94 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.65 Total: -36.93 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.40 Total: -19.58 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.04 -5.28 -37.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735056.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.661 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds