Wall clock time and date at job start Sun Mar 29 2020 22:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35790 * 120.00530 * 2 1 4 4 C 1.41509 * 120.00339 * 171.15472 * 3 2 1 5 5 C 1.38037 * 126.10787 * 139.75357 * 4 3 2 6 6 C 1.40288 * 106.52519 * 179.78725 * 5 4 3 7 7 C 1.35177 * 107.21299 * 0.35336 * 6 5 4 8 8 O 1.34041 * 109.04340 * 359.63907 * 7 6 5 9 9 C 1.41334 * 119.99769 * 179.97438 * 2 1 3 10 10 O 1.21847 * 120.00417 * 172.98185 * 9 2 1 11 11 N 1.34777 * 120.00414 * 352.99360 * 9 2 1 12 12 C 1.36737 * 120.00647 * 179.97438 * 11 9 2 13 13 H 1.08004 * 119.99492 * 359.97438 * 12 11 9 14 14 C 1.39072 * 120.00236 * 179.97438 * 12 11 9 15 15 N 1.31352 * 120.00054 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99678 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47340 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46769 * 120.00143 * 16 14 12 19 19 H 1.48502 * 109.46948 * 239.99618 * 16 14 12 20 20 H 1.09000 * 109.46676 * 89.99717 * 1 2 3 21 21 H 1.08998 * 109.47187 * 209.99986 * 1 2 3 22 22 H 1.09004 * 109.46357 * 330.00106 * 1 2 3 23 23 H 1.08007 * 119.99568 * 351.16092 * 3 2 1 24 24 H 1.08006 * 126.73887 * 0.02562 * 5 4 3 25 25 H 1.08007 * 126.39225 * 180.26092 * 6 5 4 26 26 H 1.08001 * 125.47724 * 179.90596 * 7 6 5 27 27 H 0.97003 * 119.99468 * 359.97438 * 11 9 2 28 28 H 0.96998 * 120.00146 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.1759 0.0000 4 6 3.5886 1.1832 0.1884 5 6 4.4951 1.9806 -0.4806 6 6 5.7623 1.6564 0.0266 7 6 5.5859 0.6918 0.9570 8 8 4.2787 0.4117 1.0542 9 6 2.2137 -1.2240 0.0005 10 8 3.4253 -1.2282 -0.1284 11 7 1.5474 -2.3868 0.1434 12 6 2.2309 -3.5711 0.1434 13 1 3.3048 -3.5747 0.0285 14 6 1.5433 -4.7709 0.2914 15 7 0.2373 -4.7664 0.4317 16 14 2.4772 -6.3887 0.2907 17 1 3.9279 -6.1228 0.1176 18 1 2.2524 -7.0905 1.5800 19 1 1.9934 -7.2390 -0.8266 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8901 0.5139 23 1 1.6557 2.1057 -0.1437 24 1 4.2722 2.7133 -1.2422 25 1 6.7033 2.0946 -0.2717 26 1 6.3714 0.2251 1.5329 27 1 0.5828 -2.3836 0.2463 28 1 -0.2422 -5.6032 0.5353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542735056.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:16 Heat of formation + Delta-G solvation = -23.383409 kcal Electronic energy + Delta-G solvation = -14692.342236 eV Core-core repulsion = 12095.860390 eV Total energy + Delta-G solvation = -2596.481846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.12270 -40.45502 -36.32557 -35.44072 -33.68001 -33.40693 -31.02333 -27.32571 -27.13895 -24.12537 -22.36228 -21.69445 -20.30472 -19.55703 -18.41924 -17.07403 -16.66143 -16.54389 -15.97900 -15.59819 -15.14717 -14.47484 -13.99897 -13.80735 -13.55372 -13.51218 -13.24816 -13.20890 -12.96779 -12.78187 -12.33050 -12.14015 -11.58328 -10.68737 -10.56088 -10.23209 -10.03853 -8.65940 -8.55549 -5.96121 -0.18162 1.30794 1.38499 1.44290 1.53303 1.92349 2.26383 2.47441 2.63773 3.29268 3.37858 3.96663 4.23840 4.26891 4.33152 4.44031 4.66795 4.84665 4.90890 5.05343 5.13008 5.28536 5.35187 5.39226 5.58248 5.84989 6.00456 6.50186 6.55695 7.07080 7.49285 8.10477 8.61330 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035500 B = 0.008436 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.543255 B = 3318.436316 C = 3993.941654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.152 4.152 3 C -0.051 4.051 4 C 0.010 3.990 5 C -0.210 4.210 6 C -0.227 4.227 7 C -0.057 4.057 8 O -0.165 6.165 9 C 0.447 3.553 10 O -0.618 6.618 11 N -0.556 5.556 12 C -0.329 4.329 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.911 5.911 16 Si 0.997 3.003 17 H -0.275 1.275 18 H -0.268 1.268 19 H -0.267 1.267 20 H 0.086 0.914 21 H 0.055 0.945 22 H 0.104 0.896 23 H 0.193 0.807 24 H 0.171 0.829 25 H 0.172 0.828 26 H 0.214 0.786 27 H 0.397 0.603 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.522 10.702 -0.118 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.155 4.155 3 C -0.071 4.071 4 C -0.040 4.040 5 C -0.229 4.229 6 C -0.245 4.245 7 C -0.126 4.126 8 O -0.059 6.059 9 C 0.239 3.761 10 O -0.508 6.508 11 N -0.192 5.192 12 C -0.459 4.459 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.551 5.551 16 Si 0.820 3.180 17 H -0.199 1.199 18 H -0.193 1.193 19 H -0.192 1.192 20 H 0.104 0.896 21 H 0.074 0.926 22 H 0.123 0.877 23 H 0.210 0.790 24 H 0.188 0.812 25 H 0.189 0.811 26 H 0.230 0.770 27 H 0.234 0.766 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.992 10.270 0.023 10.461 hybrid contribution 0.121 -1.056 -0.053 1.064 sum 2.113 9.214 -0.030 9.453 Atomic orbital electron populations 1.20849 0.88242 1.03870 1.03665 1.21392 0.98369 0.92658 1.03118 1.20761 0.88574 0.98691 0.99121 1.20185 0.93989 0.93283 0.96526 1.22425 0.92178 1.04229 1.04106 1.21914 0.99680 1.02021 1.00926 1.24687 0.83824 1.00492 1.03646 1.84305 1.19215 1.51216 1.51130 1.17393 0.88087 0.85518 0.85145 1.90669 1.15224 1.87503 1.57372 1.42056 1.10193 1.05249 1.61673 1.19753 0.93480 0.84404 1.48218 0.90355 1.26150 0.96610 1.02619 0.95878 1.69639 1.07555 1.29914 1.47984 0.84817 0.77925 0.76662 0.78597 1.19924 1.19254 1.19206 0.89586 0.92586 0.87722 0.79036 0.81191 0.81101 0.76972 0.76643 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.20 9.71 71.24 0.69 -2.51 15 2 C -0.15 -5.94 5.89 -19.67 -0.12 -6.05 15 3 C -0.05 -1.72 9.58 22.51 0.22 -1.50 15 4 C 0.01 0.41 5.31 23.03 0.12 0.53 15 5 C -0.21 -6.93 10.90 22.72 0.25 -6.68 15 6 C -0.23 -7.14 10.87 22.06 0.24 -6.90 15 7 C -0.06 -2.04 12.06 67.11 0.81 -1.24 15 8 O -0.16 -7.33 7.85 17.29 0.14 -7.20 15 9 C 0.45 23.10 7.27 85.00 0.62 23.72 15 10 O -0.62 -36.02 12.02 18.88 0.23 -35.80 15 11 N -0.56 -30.08 5.21 -315.35 -1.64 -31.72 15 12 C -0.33 -19.25 9.67 84.13 0.81 -18.44 15 13 H 0.08 4.92 7.15 -2.91 -0.02 4.90 15 14 C -0.01 -0.63 5.50 84.96 0.47 -0.16 15 15 N -0.91 -49.32 13.05 21.68 0.28 -49.04 15 16 Si 1.00 43.25 29.55 68.60 2.03 45.28 15 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 20 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 21 H 0.06 1.82 6.34 -2.39 -0.02 1.81 15 22 H 0.10 2.23 8.08 -2.38 -0.02 2.21 15 23 H 0.19 4.29 8.06 -2.91 -0.02 4.26 15 24 H 0.17 4.36 8.06 -2.91 -0.02 4.33 15 25 H 0.17 4.06 8.06 -2.91 -0.02 4.03 15 26 H 0.21 6.00 8.06 -2.91 -0.02 5.98 15 27 H 0.40 20.26 5.73 -92.71 -0.53 19.73 15 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 15 Total: -1.00 -72.74 251.75 5.79 -66.95 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.65 Total: 30.77 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.11 Total: -19.24 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.36 Total: -80.76 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: 0.36 Total: -42.99 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -72.74 5.79 -66.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735056.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.563 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds