Wall clock time and date at job start Sun Mar 29 2020 22:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47595 * 2 1 4 4 C 1.36004 * 117.00364 * 179.97438 * 3 2 1 5 5 C 1.38508 * 120.08172 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01969 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.17880 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.16301 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.97977 * 0.02562 * 8 7 6 10 10 N 1.39959 * 120.09002 * 179.97438 * 9 8 7 11 11 C 1.46504 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47213 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00053 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00022 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00251 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99990 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46972 * 89.99762 * 16 14 12 18 18 H 1.48498 * 109.46935 * 209.99584 * 16 14 12 19 19 H 1.48499 * 109.46800 * 329.99516 * 16 14 12 20 20 H 1.09005 * 109.46606 * 60.00391 * 1 2 3 21 21 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47415 * 300.00322 * 1 2 3 23 23 H 1.08997 * 109.47415 * 239.99677 * 2 1 3 24 24 H 1.09010 * 109.47027 * 119.99803 * 2 1 3 25 25 H 1.08007 * 119.98777 * 0.03715 * 5 4 3 26 26 H 1.07997 * 119.90476 * 180.27859 * 6 5 4 27 27 H 1.07994 * 119.91483 * 179.97438 * 7 6 5 28 28 H 1.07998 * 120.01004 * 180.02562 * 8 7 6 29 29 H 0.96998 * 120.00271 * 179.97438 * 10 9 8 30 30 H 1.09003 * 109.46734 * 299.99685 * 11 10 9 31 31 H 1.08996 * 109.46988 * 59.99833 * 11 10 9 32 32 H 0.96997 * 120.00357 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2000 0.4282 0.0016 6 6 5.5707 0.6108 0.0027 7 6 6.1018 1.8873 0.0033 8 6 5.2652 2.9876 0.0022 9 6 3.8891 2.8120 0.0011 10 7 3.0398 3.9245 0.0006 11 6 3.6038 5.2766 0.0006 12 6 2.4859 6.2872 0.0007 13 1 1.4580 5.9555 0.0002 14 6 2.7752 7.6353 0.0002 15 7 4.0267 8.0393 0.0002 16 14 1.3894 8.8880 -0.0005 17 1 1.0220 9.2204 1.3993 18 1 1.8355 10.1191 -0.7009 19 1 0.2093 8.3202 -0.7006 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 3.7884 -0.5704 0.0014 26 1 6.2281 -0.2460 -0.0010 27 1 7.1729 2.0250 0.0045 28 1 5.6827 3.9836 0.0022 29 1 2.0778 3.8003 -0.0005 30 1 4.2175 5.4143 0.8909 31 1 4.2183 5.4140 -0.8891 32 1 4.2303 8.9876 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002041196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:29 Heat of formation + Delta-G solvation = -22.482184 kcal Electronic energy + Delta-G solvation = -14493.096189 eV Core-core repulsion = 12032.486517 eV Total energy + Delta-G solvation = -2460.609672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.69251 -37.16305 -34.87027 -32.60669 -31.60762 -29.44354 -28.74191 -26.12241 -23.95431 -22.51849 -21.49157 -20.32395 -17.99049 -16.86876 -15.83501 -15.69764 -15.43268 -14.58687 -14.29743 -13.51194 -13.43948 -13.32047 -12.73944 -12.55510 -12.45631 -12.01528 -11.57959 -11.54504 -11.01982 -10.93538 -10.87791 -10.52942 -10.48282 -10.06251 -9.40127 -9.34891 -8.50311 -8.00628 -6.31853 -6.17413 -4.21873 1.94455 2.18967 3.25428 3.31398 3.34903 3.55565 4.29103 4.42305 4.63477 5.00134 5.05897 5.19765 5.28401 5.36456 5.47753 5.55265 5.75422 5.83799 5.98862 6.09210 6.21891 6.40501 6.70832 6.85231 7.11501 7.18417 7.36840 7.47582 7.62672 7.84327 8.00703 8.38805 8.74848 8.98323 9.44277 10.93365 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027799 B = 0.007145 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.005565 B = 3918.127802 C = 4899.384453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.320 6.320 4 C 0.031 3.969 5 C -0.162 4.162 6 C -0.172 4.172 7 C -0.100 4.100 8 C -0.180 4.180 9 C 0.216 3.784 10 N -0.724 5.724 11 C 0.252 3.748 12 C -0.537 4.537 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.396 0.604 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -14.380 -0.003 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.235 6.235 4 C -0.017 4.017 5 C -0.182 4.182 6 C -0.193 4.193 7 C -0.119 4.119 8 C -0.204 4.204 9 C 0.107 3.893 10 N -0.348 5.348 11 C 0.131 3.869 12 C -0.575 4.575 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.148 0.852 29 H 0.230 0.770 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.615 -13.814 -0.008 13.908 hybrid contribution -0.872 0.450 0.008 0.982 sum -2.488 -13.364 0.000 13.594 Atomic orbital electron populations 1.21759 0.93341 1.02239 1.03532 1.22583 0.95308 0.82939 1.00639 1.85986 1.19245 1.28007 1.90220 1.18414 0.82143 0.92772 1.08358 1.20810 0.94213 0.96589 1.06549 1.20451 0.93918 0.96705 1.08252 1.20737 0.98873 0.92109 1.00147 1.20600 0.90665 0.99785 1.09356 1.17500 0.90868 0.85170 0.95757 1.45407 1.07474 1.04163 1.77789 1.19100 0.94940 0.76425 0.96484 1.21217 0.92917 0.90937 1.52429 0.91973 1.24924 0.95940 0.98398 0.94728 1.69943 1.17465 1.15875 1.49545 0.86414 0.81819 0.80473 0.78239 1.20455 1.20993 1.19751 0.91606 0.90904 0.91611 0.92748 0.92749 0.86618 0.87162 0.86760 0.85152 0.76992 0.96219 0.96211 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.76 5.46 37.16 0.20 0.97 16 3 O -0.32 -5.54 9.38 -19.75 -0.19 -5.72 16 4 C 0.03 0.58 6.70 -39.08 -0.26 0.32 16 5 C -0.16 -2.57 9.04 -39.46 -0.36 -2.93 16 6 C -0.17 -2.65 10.04 -39.56 -0.40 -3.04 16 7 C -0.10 -1.65 10.04 -39.58 -0.40 -2.05 16 8 C -0.18 -3.54 9.31 -39.41 -0.37 -3.91 16 9 C 0.22 4.51 6.67 -83.56 -0.56 3.96 16 10 N -0.72 -16.63 5.72 -59.67 -0.34 -16.97 16 11 C 0.25 6.62 4.67 -5.19 -0.02 6.59 16 12 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 13 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.62 7.67 -51.93 -0.40 0.22 16 24 H 0.05 0.62 7.66 -51.92 -0.40 0.22 16 25 H 0.12 1.51 6.30 -52.48 -0.33 1.18 16 26 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.13 2.68 6.74 -52.49 -0.35 2.32 16 29 H 0.40 8.89 7.68 -40.82 -0.31 8.57 16 30 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 31 H 0.02 0.56 7.95 -51.93 -0.41 0.14 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 274.60 15.07 4.14 4.14 Total: -1.00 -29.65 274.60 -7.13 -36.79 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.27 Total: 5.66 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.19 Total: -14.92 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.39 Total: -42.19 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.19 Total: -5.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.65 -7.13 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002041196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.304 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds