Wall clock time and date at job start Sun Mar 29 2020 22:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47595 * 2 1 4 4 C 1.36004 * 117.00364 * 179.97438 * 3 2 1 5 5 C 1.38508 * 120.08172 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01969 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.17880 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.16301 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.97977 * 0.02562 * 8 7 6 10 10 N 1.39959 * 120.09002 * 179.97438 * 9 8 7 11 11 C 1.46504 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47213 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00053 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00022 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00251 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99990 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46972 * 89.99762 * 16 14 12 18 18 H 1.48498 * 109.46935 * 209.99584 * 16 14 12 19 19 H 1.48499 * 109.46800 * 329.99516 * 16 14 12 20 20 H 1.09005 * 109.46606 * 60.00391 * 1 2 3 21 21 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47415 * 300.00322 * 1 2 3 23 23 H 1.08997 * 109.47415 * 239.99677 * 2 1 3 24 24 H 1.09010 * 109.47027 * 119.99803 * 2 1 3 25 25 H 1.08007 * 119.98777 * 0.03715 * 5 4 3 26 26 H 1.07997 * 119.90476 * 180.27859 * 6 5 4 27 27 H 1.07994 * 119.91483 * 179.97438 * 7 6 5 28 28 H 1.07998 * 120.01004 * 180.02562 * 8 7 6 29 29 H 0.96998 * 120.00271 * 179.97438 * 10 9 8 30 30 H 1.09003 * 109.46734 * 299.99685 * 11 10 9 31 31 H 1.08996 * 109.46988 * 59.99833 * 11 10 9 32 32 H 0.96997 * 120.00357 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2000 0.4282 0.0016 6 6 5.5707 0.6108 0.0027 7 6 6.1018 1.8873 0.0033 8 6 5.2652 2.9876 0.0022 9 6 3.8891 2.8120 0.0011 10 7 3.0398 3.9245 0.0006 11 6 3.6038 5.2766 0.0006 12 6 2.4859 6.2872 0.0007 13 1 1.4580 5.9555 0.0002 14 6 2.7752 7.6353 0.0002 15 7 4.0267 8.0393 0.0002 16 14 1.3894 8.8880 -0.0005 17 1 1.0220 9.2204 1.3993 18 1 1.8355 10.1191 -0.7009 19 1 0.2093 8.3202 -0.7006 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 3.7884 -0.5704 0.0014 26 1 6.2281 -0.2460 -0.0010 27 1 7.1729 2.0250 0.0045 28 1 5.6827 3.9836 0.0022 29 1 2.0778 3.8003 -0.0005 30 1 4.2175 5.4143 0.8909 31 1 4.2183 5.4140 -0.8891 32 1 4.2303 8.9876 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002041196.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:29 Heat of formation + Delta-G solvation = -41.197522 kcal Electronic energy + Delta-G solvation = -14493.907747 eV Core-core repulsion = 12032.486517 eV Total energy + Delta-G solvation = -2461.421230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.03605 -38.50874 -36.59657 -34.60337 -32.64254 -30.90930 -30.31308 -27.96091 -25.34773 -24.13126 -22.83935 -21.79121 -19.50735 -18.56747 -17.36354 -17.07987 -16.93103 -16.33944 -15.65709 -15.05072 -14.98316 -14.85577 -14.12289 -14.03824 -13.94557 -13.32360 -12.95780 -12.90819 -12.70370 -12.62397 -12.32978 -12.17354 -11.62988 -11.54374 -11.44689 -11.10214 -10.55341 -9.37619 -8.32061 -7.93295 -6.46044 0.56097 0.79394 1.38910 1.40965 1.52325 2.32440 2.38867 2.94207 3.00579 3.04378 3.97880 4.11963 4.16879 4.32497 4.38084 4.44650 4.63325 4.71368 4.85603 4.98027 5.00955 5.05348 5.23364 5.28650 5.36798 5.50871 5.55647 5.77217 5.86543 6.04108 6.37738 6.57665 6.83133 7.16443 7.27995 8.79959 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027799 B = 0.007145 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.005565 B = 3918.127802 C = 4899.384453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.343 6.343 4 C 0.031 3.969 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.105 4.105 8 C -0.198 4.198 9 C 0.172 3.828 10 N -0.736 5.736 11 C 0.276 3.724 12 C -0.560 4.560 13 H 0.066 0.934 14 C 0.010 3.990 15 N -0.926 5.926 16 Si 0.979 3.021 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.264 1.264 20 H 0.057 0.943 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.153 0.847 26 H 0.153 0.847 27 H 0.142 0.858 28 H 0.104 0.896 29 H 0.395 0.605 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -16.603 0.002 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.259 6.259 4 C -0.018 4.018 5 C -0.178 4.178 6 C -0.172 4.172 7 C -0.123 4.123 8 C -0.222 4.222 9 C 0.067 3.933 10 N -0.363 5.363 11 C 0.153 3.847 12 C -0.598 4.598 13 H 0.084 0.916 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.802 3.198 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.188 1.188 20 H 0.076 0.924 21 H 0.124 0.876 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.171 0.829 26 H 0.171 0.829 27 H 0.159 0.841 28 H 0.123 0.877 29 H 0.229 0.771 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.210 -16.103 -0.002 16.254 hybrid contribution -0.606 0.935 0.007 1.114 sum -2.815 -15.169 0.005 15.428 Atomic orbital electron populations 1.21801 0.91930 1.04096 1.02728 1.22980 0.96528 0.80983 1.02028 1.85982 1.18638 1.31175 1.90091 1.18557 0.83295 0.92364 1.07542 1.21263 0.94265 0.97367 1.04926 1.20989 0.94366 0.97271 1.04613 1.21060 0.99941 0.91780 0.99538 1.20654 0.91050 0.99970 1.10540 1.17853 0.91192 0.85754 0.98480 1.45020 1.07455 1.03473 1.80399 1.18527 0.94006 0.78526 0.93645 1.21573 0.93372 0.91904 1.52928 0.91615 1.25926 0.98724 1.00512 0.93825 1.70072 1.19723 1.16610 1.50010 0.85246 0.78398 0.77481 0.78658 1.19513 1.20193 1.18845 0.92432 0.87649 0.92431 0.91210 0.91209 0.82950 0.82915 0.84069 0.87741 0.77123 0.99201 0.99193 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 2 C 0.05 1.11 5.46 71.98 0.39 1.50 16 3 O -0.34 -11.65 9.38 -93.59 -0.88 -12.53 16 4 C 0.03 1.11 6.70 22.59 0.15 1.26 16 5 C -0.16 -4.52 9.04 22.35 0.20 -4.32 16 6 C -0.15 -4.09 10.04 22.28 0.22 -3.87 16 7 C -0.10 -3.31 10.04 22.27 0.22 -3.08 16 8 C -0.20 -8.11 9.31 22.38 0.21 -7.90 16 9 C 0.17 7.46 6.67 38.22 0.25 7.72 16 10 N -0.74 -35.87 5.72 -342.68 -1.96 -37.83 16 11 C 0.28 15.54 4.67 85.63 0.40 15.94 16 12 C -0.56 -32.53 9.28 25.60 0.24 -32.29 16 13 H 0.07 3.67 7.60 -2.91 -0.02 3.65 16 14 C 0.01 0.57 5.46 84.65 0.46 1.03 16 15 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 16 Si 0.98 44.08 29.54 68.60 2.03 46.10 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 21 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.35 7.67 -2.39 -0.02 1.34 16 24 H 0.07 1.35 7.66 -2.38 -0.02 1.34 16 25 H 0.15 3.19 6.30 -2.91 -0.02 3.17 16 26 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.10 4.70 6.74 -2.91 -0.02 4.68 16 29 H 0.40 18.73 7.68 -92.71 -0.71 18.02 16 30 H -0.01 -0.59 7.95 -2.39 -0.02 -0.61 16 31 H -0.01 -0.59 7.95 -2.39 -0.02 -0.61 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.88 274.60 3.37 -63.51 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.40 Total: 22.20 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 3.50 Total: -26.02 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -1.68 Total: -93.27 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.88 Total: -12.53 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.88 3.37 -63.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002041196.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.316 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds