Wall clock time and date at job start Sun Mar 29 2020 21:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46983 * 287.53345 * 3 2 1 5 5 N 1.46907 * 109.46957 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99885 * 189.99952 * 5 4 3 7 7 C 1.50697 * 109.46833 * 160.69254 * 6 5 4 8 8 H 1.08001 * 120.00555 * 4.97814 * 7 6 5 9 9 C 1.37874 * 120.00007 * 184.98204 * 7 6 5 10 10 N 1.31516 * 120.00379 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00001 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46770 * 90.00362 * 11 9 7 13 13 H 1.48504 * 109.47253 * 210.00107 * 11 9 7 14 14 H 1.48499 * 109.47179 * 330.00283 * 11 9 7 15 15 N 1.36605 * 110.99575 * 66.04891 * 5 4 3 16 16 C 1.35495 * 126.97501 * 60.82741 * 15 5 4 17 17 N 1.30525 * 107.30292 * 180.26033 * 16 15 5 18 18 N 1.28598 * 109.67051 * 359.97438 * 17 16 15 19 19 C 1.30517 * 109.67452 * 0.02562 * 18 17 16 20 20 H 1.08996 * 109.47074 * 167.53808 * 3 2 1 21 21 H 1.08998 * 109.47454 * 47.53239 * 3 2 1 22 22 H 1.09005 * 109.46948 * 60.00513 * 4 3 2 23 23 H 1.08989 * 109.47511 * 300.00014 * 4 3 2 24 24 H 1.08998 * 109.47177 * 280.69309 * 6 5 4 25 25 H 1.08995 * 109.47292 * 40.69352 * 6 5 4 26 26 H 0.97002 * 120.00578 * 179.97438 * 10 9 7 27 27 H 1.07990 * 126.35466 * 0.23904 * 16 15 5 28 28 H 1.07999 * 126.34438 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.4337 1.3755 5 7 4.5872 -0.4336 1.3753 6 6 5.1138 -1.0674 2.5914 7 6 6.5456 -1.4785 2.3639 8 1 7.0425 -1.2171 1.4413 9 6 7.2214 -2.1887 3.3334 10 7 8.4708 -2.5480 3.1347 11 14 6.3623 -2.6405 4.9294 12 1 5.6983 -3.9601 4.7777 13 1 7.3610 -2.7121 6.0262 14 1 5.3447 -1.6086 5.2532 15 7 5.0766 0.8337 1.2325 16 6 4.8760 1.8835 2.0654 17 7 5.5116 2.9060 1.5613 18 7 6.0943 2.5579 0.4690 19 6 5.8564 1.2977 0.2264 20 1 2.9708 1.0042 -0.2218 21 1 2.9717 -0.6930 -0.7580 22 1 2.7553 -1.4374 1.5973 23 1 2.7545 0.2599 2.1335 24 1 5.0661 -0.3602 3.4195 25 1 4.5167 -1.9474 2.8303 26 1 8.9463 -3.0473 3.8169 27 1 4.2973 1.8757 2.9772 28 1 6.2147 0.7301 -0.6196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002279324.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:10 Heat of formation + Delta-G solvation = 146.996712 kcal Electronic energy + Delta-G solvation = -14617.695757 eV Core-core repulsion = 12093.187650 eV Total energy + Delta-G solvation = -2524.508108 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.72965 -38.17287 -36.66109 -33.08363 -32.53244 -30.75178 -30.09303 -27.46518 -24.10574 -22.78850 -21.78997 -20.75067 -17.86822 -17.68423 -17.09120 -15.94927 -15.33712 -15.05397 -14.43093 -14.30675 -14.06349 -13.82810 -13.12372 -12.82195 -12.61900 -12.43831 -12.05833 -11.38756 -11.24834 -11.08344 -10.89754 -10.41589 -10.10919 -9.81277 -9.76656 -8.96299 -8.86400 -8.66967 -6.32903 -4.35618 2.27928 2.45390 2.61803 2.67167 3.07223 3.12046 3.17769 3.33052 3.68519 4.14314 4.38405 4.70058 4.74543 4.94058 4.96595 5.16652 5.39055 5.57753 5.61723 5.88632 5.96425 6.22491 6.42262 6.54979 6.70182 7.26748 7.37141 8.03972 8.20840 8.72752 9.12596 9.23183 10.79383 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.009795 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.155140 B = 2858.032391 C = 3636.307231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.214 3.786 3 C -0.025 4.025 4 C 0.032 3.968 5 N -0.285 5.285 6 C 0.146 3.854 7 C -0.524 4.524 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.885 5.885 11 Si 0.872 3.128 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.269 1.269 15 N -0.301 5.301 16 C 0.117 3.883 17 N -0.297 5.297 18 N -0.311 5.311 19 C 0.198 3.802 20 H 0.106 0.894 21 H 0.124 0.876 22 H 0.109 0.891 23 H 0.056 0.944 24 H 0.011 0.989 25 H 0.050 0.950 26 H 0.269 0.731 27 H 0.204 0.796 28 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 2.176 -3.037 9.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.104 4.104 3 C -0.065 4.065 4 C -0.098 4.098 5 N -0.101 5.101 6 C 0.021 3.979 7 C -0.561 4.561 8 H 0.103 0.897 9 C -0.126 4.126 10 N -0.522 5.522 11 Si 0.699 3.301 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.194 1.194 15 N -0.077 5.077 16 C -0.173 4.173 17 N -0.137 5.137 18 N -0.152 5.152 19 C -0.089 4.089 20 H 0.124 0.876 21 H 0.142 0.858 22 H 0.127 0.873 23 H 0.074 0.926 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.221 0.779 28 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -9.781 3.175 -3.505 10.864 hybrid contribution -0.630 -1.500 1.962 2.548 sum -10.411 1.675 -1.543 10.657 Atomic orbital electron populations 1.81228 1.12930 1.09089 1.08301 1.29022 0.95061 0.93012 0.93352 1.19224 0.81330 1.05708 1.00266 1.22662 0.87612 1.04017 0.95465 1.63831 1.05473 0.96664 1.44109 1.20902 0.98675 0.94166 0.84149 1.20744 0.93429 1.36476 1.05497 0.89744 1.24824 0.94755 0.95062 0.97985 1.69851 1.09798 1.37675 1.34842 0.86930 0.79889 0.79413 0.83919 1.19735 1.20668 1.19378 1.45737 1.37349 1.05799 1.18811 1.26495 1.05232 0.85428 1.00121 1.74165 1.10309 1.24222 1.05044 1.74301 1.20251 1.09899 1.10782 1.26240 0.95071 0.92579 0.95059 0.87632 0.85774 0.87298 0.92607 0.97109 0.93179 0.92112 0.77911 0.76624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.08 18.54 42.15 0.78 -5.30 15 2 C 0.21 2.37 15.43 -20.76 -0.32 2.05 15 3 C -0.02 -0.23 5.79 -29.52 -0.17 -0.40 15 4 C 0.03 0.35 4.88 -3.82 -0.02 0.34 15 5 N -0.28 -4.38 4.79 -115.06 -0.55 -4.93 15 6 C 0.15 2.82 3.91 -4.98 -0.02 2.80 15 7 C -0.52 -12.97 9.76 -34.44 -0.34 -13.31 15 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 15 9 C 0.08 2.03 5.47 -17.82 -0.10 1.94 15 10 N -0.88 -25.06 13.96 55.43 0.77 -24.28 15 11 Si 0.87 19.08 27.37 -169.99 -4.65 14.43 15 12 H -0.27 -5.80 7.11 56.52 0.40 -5.39 15 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 14 H -0.27 -5.55 6.69 56.52 0.38 -5.17 15 15 N -0.30 -4.79 1.75 -15.18 -0.03 -4.82 15 16 C 0.12 1.88 11.16 -89.94 -1.00 0.88 15 17 N -0.30 -5.50 12.21 29.69 0.36 -5.14 15 18 N -0.31 -5.75 12.21 29.68 0.36 -5.38 15 19 C 0.20 3.19 12.98 -89.96 -1.17 2.02 15 20 H 0.11 0.98 7.75 -51.93 -0.40 0.58 15 21 H 0.12 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.11 1.10 7.83 -51.93 -0.41 0.70 15 23 H 0.06 0.59 7.63 -51.94 -0.40 0.19 15 24 H 0.01 0.22 6.84 -51.93 -0.36 -0.13 15 25 H 0.05 0.92 6.90 -51.93 -0.36 0.56 15 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 27 H 0.20 2.66 8.05 -52.49 -0.42 2.23 15 28 H 0.22 2.79 8.06 -52.49 -0.42 2.37 15 LS Contribution 258.67 15.07 3.90 3.90 Total: -1.00 -30.99 258.67 -4.95 -35.95 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -2.77 Total: -0.74 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.13 Total: -3.69 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 1.70 Total: -49.85 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.65 Total: 14.43 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.99 -4.95 -35.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002279324.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.943 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds