Wall clock time and date at job start Sun Mar 29 2020 21:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46983 * 287.53345 * 3 2 1 5 5 N 1.46907 * 109.46957 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99885 * 189.99952 * 5 4 3 7 7 C 1.50697 * 109.46833 * 160.69254 * 6 5 4 8 8 H 1.08001 * 120.00555 * 4.97814 * 7 6 5 9 9 C 1.37874 * 120.00007 * 184.98204 * 7 6 5 10 10 N 1.31516 * 120.00379 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00001 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.46770 * 90.00362 * 11 9 7 13 13 H 1.48504 * 109.47253 * 210.00107 * 11 9 7 14 14 H 1.48499 * 109.47179 * 330.00283 * 11 9 7 15 15 N 1.36605 * 110.99575 * 66.04891 * 5 4 3 16 16 C 1.35495 * 126.97501 * 60.82741 * 15 5 4 17 17 N 1.30525 * 107.30292 * 180.26033 * 16 15 5 18 18 N 1.28598 * 109.67051 * 359.97438 * 17 16 15 19 19 C 1.30517 * 109.67452 * 0.02562 * 18 17 16 20 20 H 1.08996 * 109.47074 * 167.53808 * 3 2 1 21 21 H 1.08998 * 109.47454 * 47.53239 * 3 2 1 22 22 H 1.09005 * 109.46948 * 60.00513 * 4 3 2 23 23 H 1.08989 * 109.47511 * 300.00014 * 4 3 2 24 24 H 1.08998 * 109.47177 * 280.69309 * 6 5 4 25 25 H 1.08995 * 109.47292 * 40.69352 * 6 5 4 26 26 H 0.97002 * 120.00578 * 179.97438 * 10 9 7 27 27 H 1.07990 * 126.35466 * 0.23904 * 16 15 5 28 28 H 1.07999 * 126.34438 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.4337 1.3755 5 7 4.5872 -0.4336 1.3753 6 6 5.1138 -1.0674 2.5914 7 6 6.5456 -1.4785 2.3639 8 1 7.0425 -1.2171 1.4413 9 6 7.2214 -2.1887 3.3334 10 7 8.4708 -2.5480 3.1347 11 14 6.3623 -2.6405 4.9294 12 1 5.6983 -3.9601 4.7777 13 1 7.3610 -2.7121 6.0262 14 1 5.3447 -1.6086 5.2532 15 7 5.0766 0.8337 1.2325 16 6 4.8760 1.8835 2.0654 17 7 5.5116 2.9060 1.5613 18 7 6.0943 2.5579 0.4690 19 6 5.8564 1.2977 0.2264 20 1 2.9708 1.0042 -0.2218 21 1 2.9717 -0.6930 -0.7580 22 1 2.7553 -1.4374 1.5973 23 1 2.7545 0.2599 2.1335 24 1 5.0661 -0.3602 3.4195 25 1 4.5167 -1.9474 2.8303 26 1 8.9463 -3.0473 3.8169 27 1 4.2973 1.8757 2.9772 28 1 6.2147 0.7301 -0.6196 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002279324.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:10 Heat of formation + Delta-G solvation = 128.324994 kcal Electronic energy + Delta-G solvation = -14618.505424 eV Core-core repulsion = 12093.187650 eV Total energy + Delta-G solvation = -2525.317774 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.00939 -39.34897 -37.67140 -34.90728 -33.57513 -32.17313 -31.40635 -28.96351 -25.17536 -24.36986 -23.09084 -22.03277 -19.13065 -18.80000 -18.69439 -17.18174 -16.49270 -16.32522 -15.86331 -15.53966 -15.40504 -14.83424 -14.53389 -14.20710 -13.80017 -13.69794 -13.14127 -12.79851 -12.58838 -12.46147 -12.09706 -11.98195 -11.64944 -11.41936 -11.11191 -10.79314 -10.27377 -9.95452 -8.28787 -6.35068 1.01377 1.32426 1.38366 1.41469 1.48678 1.69400 1.75531 2.01905 2.33396 2.70488 3.06245 3.33089 3.76426 3.84247 3.94136 4.28711 4.39573 4.48653 4.55484 4.80310 4.83806 4.94985 4.99217 5.27927 5.32075 5.55929 6.30149 6.51648 6.70232 6.83790 7.28019 7.82771 8.87308 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.009795 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.155140 B = 2858.032391 C = 3636.307231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.243 3.757 3 C -0.012 4.012 4 C 0.030 3.970 5 N -0.287 5.287 6 C 0.150 3.850 7 C -0.520 4.520 8 H 0.043 0.957 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.939 3.061 12 H -0.259 1.259 13 H -0.294 1.294 14 H -0.241 1.241 15 N -0.303 5.303 16 C 0.122 3.878 17 N -0.330 5.330 18 N -0.342 5.342 19 C 0.200 3.800 20 H 0.108 0.892 21 H 0.146 0.854 22 H 0.127 0.873 23 H 0.069 0.931 24 H 0.016 0.984 25 H 0.074 0.926 26 H 0.266 0.734 27 H 0.234 0.766 28 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.985 1.831 -2.339 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.075 4.075 3 C -0.053 4.053 4 C -0.099 4.099 5 N -0.103 5.103 6 C 0.024 3.976 7 C -0.558 4.558 8 H 0.061 0.939 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.763 3.237 12 H -0.184 1.184 13 H -0.221 1.221 14 H -0.164 1.164 15 N -0.079 5.079 16 C -0.168 4.168 17 N -0.170 5.170 18 N -0.182 5.182 19 C -0.089 4.089 20 H 0.126 0.874 21 H 0.163 0.837 22 H 0.145 0.855 23 H 0.087 0.913 24 H 0.034 0.966 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.250 0.750 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.858 2.859 -2.829 12.522 hybrid contribution 0.039 -1.365 1.648 2.141 sum -11.819 1.494 -1.180 11.971 Atomic orbital electron populations 1.81273 1.14453 1.10846 1.09901 1.29162 0.95017 0.91433 0.91844 1.19205 0.79821 1.06388 0.99847 1.22805 0.84469 1.05655 0.96921 1.63625 1.08078 0.96354 1.42203 1.20689 0.95780 0.95389 0.85712 1.21055 0.96151 1.35067 1.03531 0.93895 1.25771 0.95278 0.95400 1.02054 1.70034 1.12089 1.39912 1.36349 0.85846 0.78973 0.80285 0.78634 1.18383 1.22058 1.16412 1.45789 1.37414 1.05937 1.18752 1.27038 1.04382 0.84795 1.00547 1.74099 1.11588 1.25658 1.05655 1.74238 1.21311 1.11273 1.11419 1.26708 0.94320 0.92198 0.95626 0.87400 0.83677 0.85520 0.91287 0.96617 0.90832 0.92454 0.75020 0.74399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.54 18.54 20.01 0.37 -12.16 15 2 C 0.24 4.68 15.43 89.44 1.38 6.06 15 3 C -0.01 -0.18 5.79 28.79 0.17 -0.01 15 4 C 0.03 0.54 4.88 86.30 0.42 0.96 15 5 N -0.29 -7.91 4.79 -517.93 -2.48 -10.39 15 6 C 0.15 5.31 3.91 85.56 0.33 5.65 15 7 C -0.52 -25.38 9.76 25.60 0.25 -25.13 15 8 H 0.04 2.40 8.06 -2.91 -0.02 2.37 15 9 C 0.01 0.69 5.47 84.65 0.46 1.16 15 10 N -0.94 -54.73 13.96 21.45 0.30 -54.43 15 11 Si 0.94 38.03 27.37 68.60 1.88 39.91 15 12 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 13 H -0.29 -12.46 7.11 99.48 0.71 -11.76 15 14 H -0.24 -8.57 6.69 99.48 0.67 -7.91 15 15 N -0.30 -8.96 1.75 -201.93 -0.35 -9.31 15 16 C 0.12 3.66 11.16 180.11 2.01 5.67 15 17 N -0.33 -11.90 12.21 -59.99 -0.73 -12.63 15 18 N -0.34 -12.42 12.21 -60.00 -0.73 -13.16 15 19 C 0.20 6.18 12.98 180.12 2.34 8.52 15 20 H 0.11 1.65 7.75 -2.39 -0.02 1.63 15 21 H 0.15 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.13 1.93 7.83 -2.38 -0.02 1.91 15 23 H 0.07 1.13 7.63 -2.39 -0.02 1.11 15 24 H 0.02 0.57 6.84 -2.39 -0.02 0.55 15 25 H 0.07 2.34 6.90 -2.39 -0.02 2.32 15 26 H 0.27 14.58 8.31 -92.71 -0.77 13.81 15 27 H 0.23 5.24 8.05 -2.92 -0.02 5.21 15 28 H 0.24 5.88 8.06 -2.91 -0.02 5.85 15 Total: -1.00 -68.55 258.67 6.74 -61.80 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.13 Total: 7.50 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 7.36 Total: 2.87 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.63 Total: -112.08 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.88 Total: 39.91 kcal Total: -68.55 6.74 -61.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002279324.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.129 kcal (2) G-P(sol) polarization free energy of solvation -68.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds