Wall clock time and date at job start Sun Mar 29 2020 22:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00261 * 2 1 4 4 C 1.38736 * 120.05123 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94112 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05550 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94603 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46943 * 90.00050 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99826 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46802 * 60.00722 * 14 12 10 16 16 H 1.48498 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47344 * 300.00519 * 14 12 10 18 18 C 1.38269 * 120.11470 * 0.25554 * 6 5 4 19 19 C 1.38152 * 120.05179 * 359.44756 * 18 6 5 20 20 H 1.09002 * 109.46904 * 300.00337 * 1 2 3 21 21 H 1.09005 * 109.46939 * 59.99811 * 1 2 3 22 22 H 1.08993 * 109.47832 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.02724 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.97145 * 180.02562 * 5 4 3 25 25 H 1.09004 * 109.46763 * 330.00491 * 7 6 5 26 26 H 1.08995 * 109.47483 * 210.00148 * 7 6 5 27 27 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 28 28 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 29 29 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 30 30 H 0.96997 * 120.00392 * 179.97438 * 13 12 10 31 31 H 1.07995 * 119.97476 * 179.70530 * 18 6 5 32 32 H 1.08002 * 120.02819 * 180.25313 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2846 0.0005 5 6 4.0563 2.5167 0.0011 6 6 3.3022 3.6756 0.0016 7 6 3.9864 5.0183 0.0028 8 7 4.2092 5.4555 -1.3819 9 6 4.8765 6.7637 -1.4199 10 6 5.0872 7.1786 -2.8533 11 1 4.7579 6.5351 -3.6557 12 6 5.6993 8.3802 -3.1403 13 7 6.0998 9.1640 -2.1632 14 14 5.9611 8.8942 -4.9170 15 1 4.6478 8.9876 -5.6038 16 1 6.6356 10.2166 -4.9554 17 1 6.8085 7.8867 -5.6040 18 6 1.9214 3.6047 0.0069 19 6 1.2917 2.3751 0.0002 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 4.0208 0.3796 0.0005 24 1 5.1347 2.5747 0.0011 25 1 4.9442 4.9375 0.5168 26 1 3.3583 5.7457 0.5169 27 1 4.7351 4.7665 -1.8985 28 1 4.2548 7.5034 -0.9155 29 1 5.8404 6.6946 -0.9158 30 1 6.5309 10.0092 -2.3650 31 1 1.3346 4.5113 0.0122 32 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:55 Heat of formation + Delta-G solvation = -18.880791 kcal Electronic energy + Delta-G solvation = -14049.844512 eV Core-core repulsion = 11589.391008 eV Total energy + Delta-G solvation = -2460.453504 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03749 -37.71253 -35.01534 -32.53371 -30.98779 -30.27433 -27.74212 -26.48905 -23.95691 -22.50539 -21.46604 -20.72627 -18.11122 -16.53446 -16.18513 -15.77650 -15.25385 -14.61991 -14.45723 -13.97991 -13.64557 -13.40361 -13.26867 -12.50274 -12.44467 -12.02292 -11.56237 -11.32735 -11.14960 -10.92945 -10.70100 -10.61764 -10.58754 -9.90793 -9.20221 -8.85421 -8.47236 -7.98326 -7.27254 -6.02320 -4.04363 1.48984 1.58148 3.25249 3.34816 3.38301 3.41807 3.90536 4.44800 4.83345 4.95698 5.01134 5.06182 5.17920 5.30714 5.33464 5.47443 5.55763 5.63815 5.77185 5.96885 6.23093 6.23636 6.41446 6.50925 6.88563 6.91434 7.24786 7.41975 7.43467 7.79002 8.13085 8.40119 8.61339 9.04737 9.60480 11.08767 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055817 B = 0.004609 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.521202 B = 6074.003340 C = 6211.174309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.152 4.152 5 C -0.078 4.078 6 C -0.101 4.101 7 C 0.097 3.903 8 N -0.684 5.684 9 C 0.193 3.807 10 C -0.515 4.515 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.900 3.100 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.061 4.061 19 C -0.209 4.209 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.096 0.904 23 H 0.126 0.874 24 H 0.126 0.874 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.330 0.670 28 H 0.028 0.972 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.126 0.874 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 -15.268 5.820 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.068 3.932 4 C -0.171 4.171 5 C -0.096 4.096 6 C -0.102 4.102 7 C -0.032 4.032 8 N -0.315 5.315 9 C 0.066 3.934 10 C -0.553 4.553 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.079 4.079 19 C -0.227 4.227 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.114 0.886 23 H 0.144 0.856 24 H 0.144 0.856 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.146 0.854 28 H 0.046 0.954 29 H 0.005 0.995 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.299 -14.986 5.791 18.563 hybrid contribution 0.795 0.315 -0.672 1.088 sum -8.503 -14.672 5.119 17.713 Atomic orbital electron populations 1.23001 0.78778 1.03519 1.01352 1.86031 1.21098 1.27326 1.89162 1.18990 0.92367 0.83925 0.97871 1.20339 0.91253 0.98433 1.07079 1.20908 0.99843 0.91098 0.97785 1.19971 0.93733 0.95368 1.01119 1.20830 0.97692 0.91822 0.92874 1.60744 1.54928 1.06409 1.09414 1.19584 0.91622 0.84835 0.97331 1.21154 1.37917 1.04108 0.92159 0.91990 1.24988 0.95590 0.96432 0.97542 1.69950 1.40679 1.11723 1.31467 0.86530 0.78392 0.77577 0.84723 1.20147 1.21335 1.20248 1.20866 0.94164 0.96854 0.96054 1.21194 0.99698 0.92423 1.09410 0.92818 0.92696 0.88579 0.85597 0.85562 0.95452 0.91006 0.85395 0.95359 0.99520 0.92846 0.85594 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.00 10.50 -19.41 -0.20 -4.20 16 3 C 0.11 1.55 6.69 -39.22 -0.26 1.28 16 4 C -0.15 -2.08 9.99 -39.43 -0.39 -2.47 16 5 C -0.08 -1.12 9.69 -39.61 -0.38 -1.50 16 6 C -0.10 -1.61 5.39 -104.60 -0.56 -2.17 16 7 C 0.10 1.77 5.81 -4.98 -0.03 1.74 16 8 N -0.68 -15.02 6.48 -116.34 -0.75 -15.78 16 9 C 0.19 5.12 5.44 -4.97 -0.03 5.09 16 10 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 11 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 14 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.06 -0.90 9.69 -39.60 -0.38 -1.28 16 19 C -0.21 -2.76 9.04 -39.43 -0.36 -3.11 16 20 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 21 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 22 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 24 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 27 H 0.33 7.00 8.71 -39.29 -0.34 6.66 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H -0.01 -0.36 8.14 -51.93 -0.42 -0.79 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.12 1.32 6.30 -52.49 -0.33 0.99 16 LS Contribution 278.68 15.07 4.20 4.20 Total: -1.00 -31.24 278.68 -7.26 -38.50 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.39 Total: 1.53 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.83 Total: -14.80 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.02 Total: -42.09 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -0.20 Total: -4.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.24 -7.26 -38.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.622 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds