Wall clock time and date at job start Sun Mar 29 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35895 * 117.00261 * 2 1 4 4 C 1.38736 * 120.05123 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94112 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.05550 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94603 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46943 * 90.00050 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00144 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00103 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99826 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46802 * 60.00722 * 14 12 10 16 16 H 1.48498 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47344 * 300.00519 * 14 12 10 18 18 C 1.38269 * 120.11470 * 0.25554 * 6 5 4 19 19 C 1.38152 * 120.05179 * 359.44756 * 18 6 5 20 20 H 1.09002 * 109.46904 * 300.00337 * 1 2 3 21 21 H 1.09005 * 109.46939 * 59.99811 * 1 2 3 22 22 H 1.08993 * 109.47832 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.02724 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.97145 * 180.02562 * 5 4 3 25 25 H 1.09004 * 109.46763 * 330.00491 * 7 6 5 26 26 H 1.08995 * 109.47483 * 210.00148 * 7 6 5 27 27 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 28 28 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 29 29 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 30 30 H 0.96997 * 120.00392 * 179.97438 * 13 12 10 31 31 H 1.07995 * 119.97476 * 179.70530 * 18 6 5 32 32 H 1.08002 * 120.02819 * 180.25313 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2846 0.0005 5 6 4.0563 2.5167 0.0011 6 6 3.3022 3.6756 0.0016 7 6 3.9864 5.0183 0.0028 8 7 4.2092 5.4555 -1.3819 9 6 4.8765 6.7637 -1.4199 10 6 5.0872 7.1786 -2.8533 11 1 4.7579 6.5351 -3.6557 12 6 5.6993 8.3802 -3.1403 13 7 6.0998 9.1640 -2.1632 14 14 5.9611 8.8942 -4.9170 15 1 4.6478 8.9876 -5.6038 16 1 6.6356 10.2166 -4.9554 17 1 6.8085 7.8867 -5.6040 18 6 1.9214 3.6047 0.0069 19 6 1.2917 2.3751 0.0002 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 4.0208 0.3796 0.0005 24 1 5.1347 2.5747 0.0011 25 1 4.9442 4.9375 0.5168 26 1 3.3583 5.7457 0.5169 27 1 4.7351 4.7665 -1.8985 28 1 4.2548 7.5034 -0.9155 29 1 5.8404 6.6946 -0.9158 30 1 6.5309 10.0092 -2.3650 31 1 1.3346 4.5113 0.0122 32 1 0.2130 2.3202 0.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199344.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:54 Heat of formation + Delta-G solvation = -39.758777 kcal Electronic energy + Delta-G solvation = -14050.749850 eV Core-core repulsion = 11589.391008 eV Total energy + Delta-G solvation = -2461.358841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04726 -38.81901 -36.73509 -34.56677 -32.08058 -31.66508 -28.95151 -27.95532 -25.53766 -23.56633 -23.43900 -21.94317 -19.08442 -18.60803 -17.23782 -16.88657 -16.60480 -16.36644 -15.87111 -15.23440 -15.12044 -14.70454 -14.45221 -14.25132 -13.53153 -13.41505 -13.11292 -12.82452 -12.72049 -12.57022 -12.30058 -11.98194 -11.83731 -11.66513 -11.31101 -10.65734 -9.92956 -9.21957 -8.98176 -8.22241 -6.33898 0.41262 0.45740 1.41851 1.45512 1.53638 2.40275 2.40937 2.78467 3.10784 3.74435 3.86075 3.98059 4.04545 4.27954 4.42432 4.43512 4.48077 4.61853 4.72954 4.78258 4.81224 5.07375 5.13100 5.24109 5.32125 5.41564 5.60419 5.75584 5.81498 6.01424 6.42919 6.48050 6.69821 6.87641 7.37013 8.89023 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.055817 B = 0.004609 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.521202 B = 6074.003340 C = 6211.174309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.113 3.887 4 C -0.159 4.159 5 C -0.080 4.080 6 C -0.122 4.122 7 C 0.102 3.898 8 N -0.683 5.683 9 C 0.207 3.793 10 C -0.538 4.538 11 H 0.063 0.937 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.070 4.070 19 C -0.207 4.207 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.121 0.879 23 H 0.143 0.857 24 H 0.135 0.865 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.334 0.666 28 H 0.002 0.998 29 H -0.037 1.037 30 H 0.266 0.734 31 H 0.128 0.872 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.728 -16.628 4.945 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.068 3.932 4 C -0.177 4.177 5 C -0.098 4.098 6 C -0.122 4.122 7 C -0.027 4.027 8 N -0.313 5.313 9 C 0.079 3.921 10 C -0.576 4.576 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.088 4.088 19 C -0.225 4.225 20 H 0.083 0.917 21 H 0.079 0.921 22 H 0.139 0.861 23 H 0.161 0.839 24 H 0.153 0.847 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.151 0.849 28 H 0.020 0.980 29 H -0.019 1.019 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.203 -16.377 4.926 19.914 hybrid contribution 0.986 0.627 -0.328 1.213 sum -9.218 -15.750 4.599 18.819 Atomic orbital electron populations 1.23336 0.76582 1.05553 1.02177 1.86029 1.23383 1.26577 1.88779 1.19170 0.92614 0.84615 0.96807 1.20563 0.91806 0.98666 1.06700 1.21012 1.00355 0.90999 0.97456 1.19775 0.94351 0.94301 1.03803 1.20788 0.97983 0.93345 0.90577 1.60622 1.53847 1.04832 1.12046 1.19245 0.90175 0.86609 0.96083 1.21514 1.38384 1.04706 0.93033 0.91839 1.25955 0.94938 0.96284 1.02448 1.70078 1.41187 1.12182 1.33960 0.85368 0.78649 0.77420 0.78755 1.19343 1.20671 1.19088 1.20983 0.93818 0.97813 0.96232 1.21410 1.01057 0.91566 1.08499 0.91715 0.92067 0.86122 0.83909 0.84685 0.95323 0.91470 0.84888 0.97987 1.01886 0.92543 0.85383 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.43 10.50 -92.37 -0.97 -8.40 16 3 C 0.11 2.86 6.69 22.51 0.15 3.01 16 4 C -0.16 -4.07 9.99 22.37 0.22 -3.85 16 5 C -0.08 -2.23 9.69 22.25 0.22 -2.01 16 6 C -0.12 -3.82 5.39 -19.85 -0.11 -3.93 16 7 C 0.10 3.77 5.81 85.56 0.50 4.27 16 8 N -0.68 -30.50 6.48 -521.98 -3.38 -33.88 16 9 C 0.21 11.32 5.44 85.55 0.47 11.78 16 10 C -0.54 -31.28 9.32 25.60 0.24 -31.04 16 11 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 12 C 0.00 0.12 5.46 84.66 0.46 0.58 16 13 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 14 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 C -0.07 -2.00 9.69 22.26 0.22 -1.78 16 19 C -0.21 -5.06 9.04 22.37 0.20 -4.86 16 20 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 21 H 0.06 0.77 7.66 -2.38 -0.02 0.75 16 22 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 24 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 25 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 26 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 27 H 0.33 14.33 8.71 -89.69 -0.78 13.55 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 31 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 32 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 Total: -1.00 -66.50 278.68 1.96 -64.54 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.32 Total: 14.21 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 3.68 Total: -26.48 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -3.10 Total: -90.54 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.97 Total: -8.40 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -66.50 1.96 -64.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199344.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.779 kcal (2) G-P(sol) polarization free energy of solvation -66.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds