Wall clock time and date at job start Sun Mar 29 2020 22:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00441 * 2 1 4 4 C 1.38759 * 120.05286 * 0.24917 * 3 2 1 5 5 C 1.38118 * 119.94512 * 180.31943 * 4 3 2 6 6 C 1.38296 * 120.05619 * 359.68306 * 5 4 3 7 7 C 1.38243 * 120.10905 * 0.02562 * 6 5 4 8 8 C 1.38170 * 120.05451 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02671 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.47109 * 260.00473 * 9 8 7 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47030 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99961 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00406 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99531 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47158 * 59.99893 * 16 14 12 18 18 H 1.48501 * 109.46994 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46885 * 299.99904 * 16 14 12 20 20 H 1.08994 * 109.47203 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46894 * 299.99813 * 1 2 3 22 22 H 1.08999 * 109.46962 * 60.00335 * 1 2 3 23 23 H 1.08005 * 120.03045 * 0.02990 * 4 3 2 24 24 H 1.08001 * 119.97673 * 179.70488 * 5 4 3 25 25 H 1.08000 * 119.94496 * 180.02562 * 6 5 4 26 26 H 1.07995 * 119.97355 * 180.02562 * 7 6 5 27 27 H 1.08992 * 109.46894 * 140.00209 * 9 8 7 28 28 H 1.09004 * 109.47113 * 20.00359 * 9 8 7 29 29 H 1.00899 * 110.99484 * 303.95639 * 10 9 8 30 30 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 31 31 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 32 32 H 0.96996 * 119.99726 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6047 -0.0015 6 6 3.3020 3.6757 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0220 0.0001 10 7 4.3146 -0.5231 -1.3627 11 6 5.1108 -1.7570 -1.4009 12 6 5.1500 -2.2860 -2.8115 13 1 4.6352 -1.7581 -3.6007 14 6 5.8429 -3.4439 -3.0947 15 7 6.4701 -4.0864 -2.1337 16 14 5.8921 -4.0991 -4.8433 17 1 6.5092 -3.0846 -5.7349 18 1 6.6969 -5.3465 -4.8820 19 1 4.5096 -4.3869 -5.3031 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.2128 2.3204 0.0098 24 1 1.3341 4.5114 -0.0022 25 1 3.7923 4.6380 -0.0115 26 1 5.1344 2.5751 -0.0096 27 1 3.7948 -0.7102 0.6643 28 1 5.2625 0.2457 0.3474 29 1 3.3884 -0.6784 -1.7316 30 1 6.1254 -1.5453 -1.0636 31 1 4.6582 -2.5020 -0.7464 32 1 6.9579 -4.9008 -2.3329 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:05 Heat of formation + Delta-G solvation = -17.198995 kcal Electronic energy + Delta-G solvation = -14479.229142 eV Core-core repulsion = 12018.848566 eV Total energy + Delta-G solvation = -2460.380576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05437 -37.26921 -35.21548 -32.64666 -30.87492 -29.92700 -27.40885 -26.73942 -24.19100 -21.98474 -21.44574 -20.85270 -17.85959 -16.43976 -16.08821 -15.63266 -15.43019 -14.59434 -14.29772 -14.17210 -13.64707 -13.37589 -12.91150 -12.32086 -12.23006 -11.85825 -11.55611 -11.26506 -11.07557 -11.01674 -10.75979 -10.62400 -10.43997 -9.86855 -9.14715 -8.69458 -8.41668 -7.98359 -7.16388 -5.97210 -3.98705 1.49983 1.60985 3.37558 3.40758 3.43035 3.44469 3.92866 4.48692 4.87485 4.95768 5.12426 5.17965 5.20356 5.38392 5.47263 5.50921 5.54735 5.74454 5.81963 6.06344 6.11556 6.40586 6.46871 6.60547 6.79531 6.98095 7.33228 7.51278 7.55989 7.85018 8.19849 8.50382 8.70302 9.10575 9.65603 11.13988 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.006072 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.583226 B = 4609.897955 C = 4915.193575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.130 3.870 4 C -0.212 4.212 5 C -0.092 4.092 6 C -0.160 4.160 7 C -0.068 4.068 8 C -0.096 4.096 9 C 0.103 3.897 10 N -0.683 5.683 11 C 0.194 3.806 12 C -0.512 4.512 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 H 0.098 0.902 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.129 0.871 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.331 0.669 30 H 0.027 0.973 31 H -0.013 1.013 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.797 12.499 5.892 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.084 3.916 4 C -0.231 4.231 5 C -0.110 4.110 6 C -0.178 4.178 7 C -0.086 4.086 8 C -0.097 4.097 9 C -0.027 4.027 10 N -0.313 5.313 11 C 0.067 3.933 12 C -0.551 4.551 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 H 0.117 0.883 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.141 0.859 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.147 0.853 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.046 0.954 31 H 0.004 0.996 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.058 12.514 5.738 17.050 hybrid contribution -0.819 -0.889 -0.499 1.308 sum -10.877 11.625 5.240 16.760 Atomic orbital electron populations 1.23017 0.78897 1.03840 1.00863 1.86156 1.20884 1.26764 1.88474 1.18938 0.91953 0.84167 0.96539 1.21144 0.99625 0.92469 1.09848 1.20828 0.94691 0.96631 0.98874 1.21010 0.93864 0.98252 1.04690 1.20929 1.00083 0.90834 0.96781 1.19469 0.90356 0.96556 1.03338 1.20692 0.97588 0.91606 0.92783 1.60771 1.19309 1.33944 1.17300 1.19558 0.92830 0.84088 0.96794 1.21159 1.32031 1.07772 0.94100 0.92083 1.24986 0.95522 0.96688 0.97395 1.69961 1.33853 1.18031 1.32031 0.86541 0.77985 0.78062 0.84678 1.20175 1.21352 1.20310 0.88340 0.93082 0.92793 0.85903 0.86337 0.86215 0.85287 0.95066 0.91100 0.85214 0.95444 0.99559 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.94 9.66 -19.41 -0.19 -5.13 16 3 C 0.13 2.06 6.65 -39.22 -0.26 1.80 16 4 C -0.21 -2.79 9.04 -39.43 -0.36 -3.14 16 5 C -0.09 -1.11 10.04 -39.60 -0.40 -1.51 16 6 C -0.16 -2.03 10.04 -39.56 -0.40 -2.42 16 7 C -0.07 -1.01 9.67 -39.60 -0.38 -1.39 16 8 C -0.10 -1.64 5.41 -104.47 -0.56 -2.21 16 9 C 0.10 2.03 5.47 -4.97 -0.03 2.00 16 10 N -0.68 -15.94 6.48 -116.34 -0.75 -16.69 16 11 C 0.19 5.35 5.44 -4.98 -0.03 5.32 16 12 C -0.51 -15.10 9.32 -34.44 -0.32 -15.42 16 13 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 16 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 21 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 22 H 0.05 0.52 7.67 -51.93 -0.40 0.13 16 23 H 0.12 1.30 6.30 -52.48 -0.33 0.97 16 24 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 25 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 26 H 0.13 1.76 8.04 -52.49 -0.42 1.34 16 27 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 28 H 0.07 1.35 8.00 -51.93 -0.42 0.94 16 29 H 0.33 7.69 8.63 -39.29 -0.34 7.35 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 277.45 15.07 4.18 4.18 Total: -1.00 -32.23 277.45 -7.26 -39.48 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.37 Total: 1.87 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -1.84 Total: -14.13 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.02 Total: -43.48 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.19 Total: -5.13 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.23 -7.26 -39.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.285 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds