Wall clock time and date at job start Sun Mar 29 2020 22:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00441 * 2 1 4 4 C 1.38759 * 120.05286 * 0.24917 * 3 2 1 5 5 C 1.38118 * 119.94512 * 180.31943 * 4 3 2 6 6 C 1.38296 * 120.05619 * 359.68306 * 5 4 3 7 7 C 1.38243 * 120.10905 * 0.02562 * 6 5 4 8 8 C 1.38170 * 120.05451 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.02671 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.47109 * 260.00473 * 9 8 7 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.47030 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99961 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00406 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99531 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47158 * 59.99893 * 16 14 12 18 18 H 1.48501 * 109.46994 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46885 * 299.99904 * 16 14 12 20 20 H 1.08994 * 109.47203 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46894 * 299.99813 * 1 2 3 22 22 H 1.08999 * 109.46962 * 60.00335 * 1 2 3 23 23 H 1.08005 * 120.03045 * 0.02990 * 4 3 2 24 24 H 1.08001 * 119.97673 * 179.70488 * 5 4 3 25 25 H 1.08000 * 119.94496 * 180.02562 * 6 5 4 26 26 H 1.07995 * 119.97355 * 180.02562 * 7 6 5 27 27 H 1.08992 * 109.46894 * 140.00209 * 9 8 7 28 28 H 1.09004 * 109.47113 * 20.00359 * 9 8 7 29 29 H 1.00899 * 110.99484 * 303.95639 * 10 9 8 30 30 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 31 31 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 32 32 H 0.96996 * 119.99726 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0052 5 6 1.9209 3.6047 -0.0015 6 6 3.3020 3.6757 -0.0067 7 6 4.0560 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0220 0.0001 10 7 4.3146 -0.5231 -1.3627 11 6 5.1108 -1.7570 -1.4009 12 6 5.1500 -2.2860 -2.8115 13 1 4.6352 -1.7581 -3.6007 14 6 5.8429 -3.4439 -3.0947 15 7 6.4701 -4.0864 -2.1337 16 14 5.8921 -4.0991 -4.8433 17 1 6.5092 -3.0846 -5.7349 18 1 6.6969 -5.3465 -4.8820 19 1 4.5096 -4.3869 -5.3031 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.2128 2.3204 0.0098 24 1 1.3341 4.5114 -0.0022 25 1 3.7923 4.6380 -0.0115 26 1 5.1344 2.5751 -0.0096 27 1 3.7948 -0.7102 0.6643 28 1 5.2625 0.2457 0.3474 29 1 3.3884 -0.6784 -1.7316 30 1 6.1254 -1.5453 -1.0636 31 1 4.6582 -2.5020 -0.7464 32 1 6.9579 -4.9008 -2.3329 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:05 Heat of formation + Delta-G solvation = -39.420474 kcal Electronic energy + Delta-G solvation = -14480.192737 eV Core-core repulsion = 12018.848566 eV Total energy + Delta-G solvation = -2461.344171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14950 -38.36891 -37.02333 -34.70649 -32.37013 -30.98406 -28.94005 -28.07122 -25.89826 -23.50998 -22.99144 -22.17724 -18.99940 -18.51097 -17.24870 -16.91860 -16.63799 -16.43668 -15.86671 -15.32638 -15.15750 -14.82244 -14.43935 -13.94445 -13.51209 -13.29815 -13.02379 -12.85474 -12.64542 -12.61360 -12.25632 -12.07995 -11.96691 -11.62292 -11.29717 -10.67021 -9.81291 -9.20731 -9.00678 -8.23007 -6.35221 0.41234 0.54564 1.40198 1.44843 1.52983 2.39882 2.44831 2.84043 3.09460 3.72452 3.90408 3.94879 4.15202 4.30534 4.40101 4.42225 4.50716 4.60381 4.70447 4.72557 4.88123 5.05532 5.10505 5.23255 5.42196 5.55754 5.58893 5.67271 5.94447 5.99578 6.40266 6.54223 6.66625 6.85200 7.35451 8.88625 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.006072 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.583226 B = 4609.897955 C = 4915.193575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.078 4.078 8 C -0.131 4.131 9 C 0.109 3.891 10 N -0.678 5.678 11 C 0.209 3.791 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.977 3.023 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.266 1.266 20 H 0.107 0.893 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.151 0.849 24 H 0.157 0.843 25 H 0.150 0.850 26 H 0.131 0.869 27 H 0.016 0.984 28 H 0.068 0.932 29 H 0.332 0.668 30 H 0.002 0.998 31 H -0.043 1.043 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 14.236 4.872 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C 0.068 3.932 4 C -0.230 4.230 5 C -0.100 4.100 6 C -0.176 4.176 7 C -0.097 4.097 8 C -0.132 4.132 9 C -0.020 4.020 10 N -0.308 5.308 11 C 0.081 3.919 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.801 3.199 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.191 1.191 20 H 0.125 0.875 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.168 0.832 24 H 0.175 0.825 25 H 0.168 0.832 26 H 0.149 0.851 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.148 0.852 30 H 0.020 0.980 31 H -0.025 1.025 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.525 14.274 4.732 18.946 hybrid contribution -0.426 -1.355 -0.101 1.424 sum -11.951 12.919 4.631 18.198 Atomic orbital electron populations 1.23301 0.76581 1.05089 1.02416 1.86107 1.23492 1.27510 1.88681 1.19131 0.91765 0.85183 0.97080 1.21486 1.00964 0.91786 1.08740 1.21335 0.94759 0.97622 0.96310 1.21367 0.94374 0.98522 1.03358 1.21093 1.00631 0.91000 0.96955 1.19323 0.91064 0.95699 1.07111 1.20607 0.98125 0.92909 0.90337 1.60681 1.18866 1.31371 1.19911 1.19222 0.91871 0.85068 0.95732 1.21484 1.32807 1.08650 0.94703 0.91959 1.25998 0.94576 0.96677 1.02445 1.70096 1.34244 1.18472 1.34614 0.85327 0.78590 0.77538 0.78467 1.19216 1.20456 1.19089 0.87457 0.91068 0.91518 0.83171 0.82509 0.83195 0.85062 0.96568 0.91369 0.85170 0.97967 1.02506 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -11.03 9.66 -92.38 -0.89 -11.92 16 3 C 0.11 3.56 6.65 22.51 0.15 3.71 16 4 C -0.21 -4.97 9.04 22.37 0.20 -4.76 16 5 C -0.08 -1.67 10.04 22.26 0.22 -1.45 16 6 C -0.16 -3.55 10.04 22.28 0.22 -3.32 16 7 C -0.08 -2.27 9.67 22.25 0.22 -2.06 16 8 C -0.13 -4.54 5.41 -19.77 -0.11 -4.64 16 9 C 0.11 4.55 5.47 85.56 0.47 5.02 16 10 N -0.68 -33.06 6.48 -521.98 -3.38 -36.44 16 11 C 0.21 12.11 5.44 85.56 0.47 12.58 16 12 C -0.54 -32.50 9.32 25.60 0.24 -32.26 16 13 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 14 C 0.00 0.07 5.46 84.65 0.46 0.53 16 15 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 16 Si 0.98 45.60 29.54 68.60 2.03 47.63 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.07 1.14 7.65 -2.39 -0.02 1.12 16 22 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 23 H 0.15 2.61 6.30 -2.91 -0.02 2.59 16 24 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 25 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 26 H 0.13 3.59 8.04 -2.91 -0.02 3.56 16 27 H 0.02 0.71 7.86 -2.39 -0.02 0.69 16 28 H 0.07 2.78 8.00 -2.38 -0.02 2.76 16 29 H 0.33 16.02 8.63 -89.69 -0.77 15.24 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -71.08 277.45 2.02 -69.06 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.33 Total: 14.86 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 3.65 Total: -25.12 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -3.10 Total: -94.50 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.89 Total: -11.92 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.08 2.02 -69.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.640 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds