Wall clock time and date at job start Sun Mar 29 2020 22:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47183 * 2 1 4 4 N 1.46893 * 109.47048 * 120.00334 * 2 1 3 5 5 C 1.46899 * 110.99969 * 274.99981 * 4 2 1 6 6 C 1.50700 * 109.47175 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00100 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00037 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00090 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99953 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47104 * 59.99842 * 10 8 6 12 12 H 1.48504 * 109.47099 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47635 * 300.00000 * 10 8 6 14 14 C 1.50706 * 109.46642 * 240.00173 * 2 1 3 15 15 C 1.38163 * 120.02719 * 264.97496 * 14 2 1 16 16 C 1.38243 * 120.05442 * 180.02562 * 15 14 2 17 17 C 1.38289 * 120.11362 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05159 * 359.97438 * 17 16 15 19 19 C 1.38708 * 120.02782 * 85.00283 * 14 2 1 20 20 O 1.35898 * 120.05505 * 359.97438 * 19 14 2 21 21 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46673 * 300.00188 * 1 2 3 23 23 H 1.09002 * 109.46871 * 59.99911 * 1 2 3 24 24 H 1.00899 * 111.00431 * 151.04649 * 4 2 1 25 25 H 1.08996 * 109.46820 * 299.99605 * 5 4 2 26 26 H 1.08996 * 109.47249 * 60.00125 * 5 4 2 27 27 H 0.97007 * 120.00041 * 179.97438 * 9 8 6 28 28 H 1.08001 * 119.97035 * 0.03182 * 15 14 2 29 29 H 1.08004 * 119.94085 * 180.02562 * 16 15 14 30 30 H 1.07993 * 119.96940 * 180.27537 * 17 16 15 31 31 H 1.08000 * 120.02369 * 180.02562 * 18 17 16 32 32 H 0.96705 * 114.00232 * 269.97496 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5885 -0.5217 3.5556 7 1 2.8381 -1.5697 3.4792 8 6 2.7329 0.1354 4.7591 9 7 2.4295 1.4116 4.8521 10 14 3.3595 -0.7873 6.2577 11 1 4.7153 -1.3243 5.9772 12 1 3.4242 0.1381 7.4174 13 1 2.4377 -1.9089 6.5697 14 6 2.0323 -0.7104 -1.2306 15 6 2.3615 -2.0509 -1.1691 16 6 2.8228 -2.7029 -2.2974 17 6 2.9564 -2.0157 -3.4900 18 6 2.6286 -0.6756 -3.5566 19 6 2.1650 -0.0190 -2.4257 20 8 1.8419 1.2995 -2.4887 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.9173 -1.1206 1.0287 25 1 2.7589 1.0460 2.1182 26 1 1.0871 0.6162 2.5525 27 1 2.5307 1.8738 5.6990 28 1 2.2583 -2.5896 -0.2388 29 1 3.0792 -3.7509 -2.2474 30 1 3.3127 -2.5285 -4.3711 31 1 2.7328 -0.1395 -4.4883 32 1 0.9188 1.4676 -2.7230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:52 Heat of formation + Delta-G solvation = -23.976078 kcal Electronic energy + Delta-G solvation = -14621.390137 eV Core-core repulsion = 12160.715685 eV Total energy + Delta-G solvation = -2460.674452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86434 -36.59514 -35.90131 -32.87565 -30.72853 -29.86987 -28.57376 -26.12287 -23.35176 -22.56222 -21.41236 -19.81072 -18.18468 -16.73376 -15.85814 -15.71156 -15.01519 -14.58072 -14.30119 -13.96068 -13.54343 -13.05626 -12.32267 -12.23136 -12.09380 -11.69770 -11.57003 -11.45178 -11.32784 -10.85220 -10.73112 -10.43698 -10.17285 -9.79331 -9.18371 -8.69844 -8.47694 -8.39458 -7.32147 -6.01400 -4.03481 1.36160 1.47475 3.34787 3.38477 3.41510 3.75882 4.34839 4.44084 4.90592 5.00550 5.14564 5.25790 5.34530 5.50030 5.67543 5.80199 5.93698 6.01383 6.14302 6.25035 6.37884 6.50697 6.60624 6.69933 6.76193 6.97450 7.29425 7.44575 7.76027 7.79722 8.14613 8.39440 8.61021 9.05219 9.61165 11.09718 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041817 B = 0.006263 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.431428 B = 4469.296540 C = 4846.240453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.120 3.880 3 H 0.052 0.948 4 N -0.684 5.684 5 C 0.194 3.806 6 C -0.515 4.515 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.900 3.100 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.098 4.098 15 C -0.091 4.091 16 C -0.131 4.131 17 C -0.116 4.116 18 C -0.150 4.150 19 C 0.103 3.897 20 O -0.495 6.495 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.041 0.959 24 H 0.330 0.670 25 H -0.013 1.013 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.141 0.859 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.865 -4.723 -15.549 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.009 3.991 3 H 0.070 0.930 4 N -0.316 5.316 5 C 0.068 3.932 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.099 4.099 15 C -0.109 4.109 16 C -0.149 4.149 17 C -0.134 4.134 18 C -0.169 4.169 19 C 0.058 3.942 20 O -0.305 6.305 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.060 0.940 24 H 0.148 0.852 25 H 0.005 0.995 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.158 0.842 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.907 -4.715 -15.075 15.910 hybrid contribution 0.637 0.167 0.476 0.813 sum -1.270 -4.548 -14.599 15.344 Atomic orbital electron populations 1.21679 0.94369 1.01797 1.00633 1.20326 0.95547 0.95843 0.87361 0.93003 1.60868 1.32450 1.34707 1.03526 1.19597 0.96572 0.90239 0.86827 1.21140 1.43454 0.96692 0.94064 0.92036 1.24986 0.95659 0.94894 0.99004 1.69955 1.48770 1.08995 1.25987 0.86542 0.79335 0.79476 0.81913 1.20289 1.21342 1.20159 1.20581 0.99471 0.94424 0.95447 1.21161 0.96931 0.93679 0.99127 1.21196 1.00632 1.00090 0.92976 1.20957 1.00517 0.93926 0.98015 1.21318 1.02739 0.94931 0.97888 1.18355 1.00176 0.83228 0.92423 1.84818 1.32776 1.20524 1.92389 0.92398 0.91888 0.94026 0.85242 0.99540 0.95247 0.92858 0.84152 0.85989 0.86137 0.85904 0.75886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.40 37.16 0.35 -1.76 16 2 C 0.12 2.22 2.55 -68.86 -0.18 2.05 16 3 H 0.05 1.07 7.35 -51.93 -0.38 0.69 16 4 N -0.68 -14.88 5.56 -109.22 -0.61 -15.49 16 5 C 0.19 5.18 5.24 -4.98 -0.03 5.15 16 6 C -0.51 -14.75 9.32 -34.44 -0.32 -15.08 16 7 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C -0.10 -1.59 4.94 -104.47 -0.52 -2.11 16 15 C -0.09 -1.36 8.85 -39.61 -0.35 -1.71 16 16 C -0.13 -1.64 10.04 -39.56 -0.40 -2.03 16 17 C -0.12 -1.35 10.04 -39.60 -0.40 -1.75 16 18 C -0.15 -1.90 9.99 -39.43 -0.39 -2.29 16 19 C 0.10 1.51 6.68 -39.22 -0.26 1.25 16 20 O -0.50 -6.86 12.64 -19.42 -0.25 -7.10 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.06 1.14 7.45 -51.93 -0.39 0.76 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.33 7.00 7.25 -39.29 -0.29 6.71 16 25 H -0.01 -0.38 8.05 -51.93 -0.42 -0.80 16 26 H 0.03 0.84 7.44 -51.93 -0.39 0.45 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.14 2.16 6.97 -52.49 -0.37 1.79 16 29 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.39 3.52 9.06 45.56 0.41 3.93 16 LS Contribution 275.01 15.07 4.14 4.14 Total: -1.00 -31.66 275.01 -7.05 -38.71 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -3.47 Total: 6.04 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.59 Total: -16.74 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.13 Total: -41.91 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.25 Total: -7.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.66 -7.05 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.737 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds