Wall clock time and date at job start Sun Mar 29 2020 22:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47183 * 2 1 4 4 N 1.46893 * 109.47048 * 120.00334 * 2 1 3 5 5 C 1.46899 * 110.99969 * 274.99981 * 4 2 1 6 6 C 1.50700 * 109.47175 * 180.02562 * 5 4 2 7 7 H 1.08005 * 120.00100 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00037 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00090 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99953 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47104 * 59.99842 * 10 8 6 12 12 H 1.48504 * 109.47099 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47635 * 300.00000 * 10 8 6 14 14 C 1.50706 * 109.46642 * 240.00173 * 2 1 3 15 15 C 1.38163 * 120.02719 * 264.97496 * 14 2 1 16 16 C 1.38243 * 120.05442 * 180.02562 * 15 14 2 17 17 C 1.38289 * 120.11362 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05159 * 359.97438 * 17 16 15 19 19 C 1.38708 * 120.02782 * 85.00283 * 14 2 1 20 20 O 1.35898 * 120.05505 * 359.97438 * 19 14 2 21 21 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46673 * 300.00188 * 1 2 3 23 23 H 1.09002 * 109.46871 * 59.99911 * 1 2 3 24 24 H 1.00899 * 111.00431 * 151.04649 * 4 2 1 25 25 H 1.08996 * 109.46820 * 299.99605 * 5 4 2 26 26 H 1.08996 * 109.47249 * 60.00125 * 5 4 2 27 27 H 0.97007 * 120.00041 * 179.97438 * 9 8 6 28 28 H 1.08001 * 119.97035 * 0.03182 * 15 14 2 29 29 H 1.08004 * 119.94085 * 180.02562 * 16 15 14 30 30 H 1.07993 * 119.96940 * 180.27537 * 17 16 15 31 31 H 1.08000 * 120.02369 * 180.02562 * 18 17 16 32 32 H 0.96705 * 114.00232 * 269.97496 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3468 6 6 2.5885 -0.5217 3.5556 7 1 2.8381 -1.5697 3.4792 8 6 2.7329 0.1354 4.7591 9 7 2.4295 1.4116 4.8521 10 14 3.3595 -0.7873 6.2577 11 1 4.7153 -1.3243 5.9772 12 1 3.4242 0.1381 7.4174 13 1 2.4377 -1.9089 6.5697 14 6 2.0323 -0.7104 -1.2306 15 6 2.3615 -2.0509 -1.1691 16 6 2.8228 -2.7029 -2.2974 17 6 2.9564 -2.0157 -3.4900 18 6 2.6286 -0.6756 -3.5566 19 6 2.1650 -0.0190 -2.4257 20 8 1.8419 1.2995 -2.4887 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.9173 -1.1206 1.0287 25 1 2.7589 1.0460 2.1182 26 1 1.0871 0.6162 2.5525 27 1 2.5307 1.8738 5.6990 28 1 2.2583 -2.5896 -0.2388 29 1 3.0792 -3.7509 -2.2474 30 1 3.3127 -2.5285 -4.3711 31 1 2.7328 -0.1395 -4.4883 32 1 0.9188 1.4676 -2.7230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:51 Heat of formation + Delta-G solvation = -46.853235 kcal Electronic energy + Delta-G solvation = -14622.382165 eV Core-core repulsion = 12160.715685 eV Total energy + Delta-G solvation = -2461.666480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97793 -37.83931 -37.31554 -34.94065 -32.36640 -30.97517 -29.83952 -28.14602 -24.82389 -23.92299 -22.91660 -21.24578 -19.30389 -18.61996 -17.29011 -16.99622 -16.56416 -16.17184 -15.71361 -15.19013 -14.90589 -14.63528 -14.21319 -13.78192 -13.34141 -13.17145 -13.02991 -12.83170 -12.72584 -12.52982 -12.51735 -12.04179 -11.88904 -11.41837 -11.11997 -10.67097 -9.75967 -9.48888 -9.19717 -8.23586 -6.35564 0.33192 0.42889 1.40459 1.44609 1.52639 2.39239 2.74735 3.09545 3.34750 3.47568 3.74293 4.09779 4.21122 4.35175 4.48735 4.55045 4.66529 4.80700 4.95049 4.97569 5.08124 5.14058 5.22225 5.30943 5.46888 5.54001 5.59739 5.67267 5.98621 6.01321 6.41167 6.67046 6.84651 6.86040 7.35392 8.88168 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041817 B = 0.006263 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.431428 B = 4469.296540 C = 4846.240453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.122 3.878 3 H 0.024 0.976 4 N -0.676 5.676 5 C 0.211 3.789 6 C -0.538 4.538 7 H 0.066 0.934 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.976 3.024 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.266 1.266 14 C -0.124 4.124 15 C -0.105 4.105 16 C -0.129 4.129 17 C -0.105 4.105 18 C -0.150 4.150 19 C 0.094 3.906 20 O -0.510 6.510 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.333 0.667 25 H -0.047 1.047 26 H 0.003 0.997 27 H 0.266 0.734 28 H 0.128 0.872 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.147 0.853 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -6.480 -16.949 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.012 3.988 3 H 0.042 0.958 4 N -0.307 5.307 5 C 0.083 3.917 6 C -0.576 4.576 7 H 0.085 0.915 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.800 3.200 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.147 4.147 17 C -0.122 4.122 18 C -0.168 4.168 19 C 0.049 3.951 20 O -0.323 6.323 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.151 0.849 25 H -0.030 1.030 26 H 0.022 0.978 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.167 0.833 30 H 0.175 0.825 31 H 0.165 0.835 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.333 -6.481 -16.504 17.781 hybrid contribution 0.438 0.735 0.789 1.164 sum -0.894 -5.746 -15.716 16.757 Atomic orbital electron populations 1.21628 0.93029 1.02106 1.01060 1.20280 0.96622 0.94400 0.87510 0.95820 1.60779 1.32508 1.33665 1.03797 1.19218 0.93984 0.89891 0.88598 1.21512 1.43920 0.97097 0.95056 0.91546 1.25999 0.95513 0.95774 1.02505 1.70097 1.49576 1.10785 1.27049 0.85336 0.79102 0.78158 0.77384 1.19112 1.20741 1.19089 1.20381 1.02083 0.95174 0.94814 1.21156 0.98049 0.93267 0.99860 1.21492 0.99494 1.01367 0.92310 1.21404 0.98500 0.93526 0.98809 1.21617 1.01702 0.95546 0.97943 1.18507 1.00599 0.83391 0.92595 1.84769 1.34544 1.20432 1.92551 0.92037 0.94351 0.90670 0.84940 1.02974 0.97846 0.92574 0.85401 0.83334 0.82465 0.83528 0.73750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 9.40 71.98 0.68 -3.42 16 2 C 0.12 4.71 2.55 44.17 0.11 4.83 16 3 H 0.02 1.05 7.35 -2.39 -0.02 1.03 16 4 N -0.68 -30.71 5.56 -499.48 -2.77 -33.49 16 5 C 0.21 11.86 5.24 85.56 0.45 12.31 16 6 C -0.54 -31.58 9.32 25.60 0.24 -31.34 16 7 H 0.07 3.75 7.81 -2.91 -0.02 3.72 16 8 C 0.00 0.02 5.46 84.66 0.46 0.48 16 9 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 10 Si 0.98 45.01 29.54 68.60 2.03 47.04 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 14 C -0.12 -3.98 4.94 -19.77 -0.10 -4.07 16 15 C -0.10 -3.05 8.85 22.25 0.20 -2.85 16 16 C -0.13 -2.85 10.04 22.28 0.22 -2.63 16 17 C -0.10 -2.02 10.04 22.25 0.22 -1.80 16 18 C -0.15 -3.32 9.99 22.36 0.22 -3.10 16 19 C 0.09 2.64 6.68 22.50 0.15 2.79 16 20 O -0.51 -13.75 12.64 -92.40 -1.17 -14.92 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.04 1.46 7.45 -2.39 -0.02 1.44 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.33 14.65 7.25 -89.69 -0.65 13.99 16 25 H -0.05 -2.92 8.05 -2.39 -0.02 -2.94 16 26 H 0.00 0.21 7.44 -2.39 -0.02 0.19 16 27 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 28 H 0.13 3.94 6.97 -2.91 -0.02 3.92 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.40 6.93 9.06 -74.05 -0.67 6.26 16 Total: -1.00 -69.89 275.01 1.03 -68.86 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.20 Total: 19.02 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 2.86 Total: -28.81 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -2.49 Total: -91.18 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -1.17 Total: -14.92 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.89 1.03 -68.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.003 kcal (2) G-P(sol) polarization free energy of solvation -69.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds