Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47182 * 2 1 4 4 N 1.46906 * 109.47135 * 119.99808 * 2 1 3 5 5 C 1.46901 * 110.99831 * 274.99806 * 4 2 1 6 6 C 1.50707 * 109.46754 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00110 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99523 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00694 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99788 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47231 * 89.99821 * 10 8 6 12 12 H 1.48501 * 109.47024 * 209.99957 * 10 8 6 13 13 H 1.48497 * 109.46839 * 329.99666 * 10 8 6 14 14 C 1.50694 * 109.47155 * 239.99893 * 2 1 3 15 15 C 1.38295 * 119.97322 * 280.00009 * 14 2 1 16 16 C 1.38243 * 120.11401 * 179.70128 * 15 14 2 17 17 C 1.38169 * 120.05492 * 0.02562 * 16 15 14 18 18 C 1.38712 * 119.94061 * 0.02562 * 17 16 15 19 19 O 1.35906 * 120.04954 * 180.02562 * 18 17 16 20 20 C 1.38122 * 119.97595 * 99.72480 * 14 2 1 21 21 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46982 * 300.00446 * 1 2 3 23 23 H 1.08997 * 109.47297 * 60.00043 * 1 2 3 24 24 H 1.00900 * 110.99633 * 38.95391 * 4 2 1 25 25 H 1.08995 * 109.47269 * 299.99749 * 5 4 2 26 26 H 1.08998 * 109.46819 * 60.00295 * 5 4 2 27 27 H 0.97004 * 120.00956 * 179.97438 * 9 8 6 28 28 H 1.07997 * 119.93892 * 359.72353 * 15 14 2 29 29 H 1.07998 * 119.97188 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.02729 * 180.02562 * 17 16 15 31 31 H 0.96705 * 113.99756 * 90.00200 * 19 18 17 32 32 H 1.08002 * 120.02294 * 0.25466 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5874 -0.5218 3.5561 7 1 2.8370 -1.5697 3.4797 8 6 2.7306 0.1351 4.7598 9 7 2.4271 1.4113 4.8527 10 14 3.3571 -0.7874 6.2585 11 1 4.8380 -0.6932 6.3144 12 1 2.7762 -0.1884 7.4869 13 1 2.9549 -2.2138 6.1655 14 6 2.0323 -0.7104 -1.2304 15 6 2.0665 -2.0925 -1.2647 16 6 2.5210 -2.7473 -2.3942 17 6 2.9428 -2.0219 -3.4919 18 6 2.9105 -0.6355 -3.4596 19 8 3.3244 0.0801 -4.5382 20 6 2.4529 0.0192 -2.3252 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.4495 -1.4979 1.4101 25 1 2.7589 1.0462 2.1182 26 1 1.0871 0.6164 2.5525 27 1 2.5274 1.8735 5.6997 28 1 1.7372 -2.6612 -0.4076 29 1 2.5463 -3.8267 -2.4186 30 1 3.2974 -2.5339 -4.3742 31 1 2.6221 0.2757 -5.1736 32 1 2.4257 1.0986 -2.2981 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = -26.942686 kcal Electronic energy + Delta-G solvation = -14387.706858 eV Core-core repulsion = 11926.903764 eV Total energy + Delta-G solvation = -2460.803094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.66961 -37.28615 -35.49328 -32.87100 -30.98123 -29.60648 -28.56524 -26.00341 -23.43119 -22.54090 -21.51915 -20.28572 -17.83424 -16.55361 -16.10785 -15.60680 -15.07110 -14.66486 -14.12205 -13.81069 -13.60808 -13.31199 -12.67103 -12.20372 -11.96208 -11.82148 -11.74871 -11.31904 -11.16424 -10.79599 -10.72999 -10.63789 -10.26610 -9.89749 -9.21594 -8.66148 -8.49105 -8.34706 -7.32424 -6.03916 -4.05907 1.45597 1.53241 3.32361 3.38104 3.41583 3.82373 4.26217 4.43365 4.95707 5.08561 5.26405 5.32116 5.36915 5.51158 5.63019 5.66607 5.74736 5.93444 6.10533 6.18648 6.27870 6.42269 6.56782 6.64444 6.88033 7.02043 7.23575 7.40850 7.70806 7.77395 8.11076 8.35922 8.58111 9.03054 9.59079 11.07135 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044417 B = 0.005574 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.240370 B = 5022.181344 C = 5179.182993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.114 3.886 3 H 0.081 0.919 4 N -0.680 5.680 5 C 0.194 3.806 6 C -0.514 4.514 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C -0.036 4.036 15 C -0.104 4.104 16 C -0.108 4.108 17 C -0.158 4.158 18 C 0.097 3.903 19 O -0.502 6.502 20 C -0.144 4.144 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.329 0.671 25 H 0.028 0.972 26 H -0.011 1.011 27 H 0.261 0.739 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.384 0.616 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -4.703 -15.286 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.099 0.901 4 N -0.310 5.310 5 C 0.068 3.932 6 C -0.553 4.553 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.036 4.036 15 C -0.123 4.123 16 C -0.126 4.126 17 C -0.177 4.177 18 C 0.053 3.947 19 O -0.311 6.311 20 C -0.163 4.163 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.147 0.853 25 H 0.046 0.954 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.239 0.761 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.379 -4.485 -15.013 15.849 hybrid contribution -0.955 -0.187 0.826 1.276 sum -3.334 -4.672 -14.187 15.304 Atomic orbital electron populations 1.22460 0.96913 1.01856 1.01956 1.20484 0.92176 0.97577 0.89409 0.90058 1.60775 1.55254 1.10475 1.04522 1.19597 0.95387 0.91790 0.86445 1.21176 1.43612 0.96955 0.93547 0.91966 1.24979 0.95599 0.94927 0.99016 1.69956 1.48831 1.09015 1.25954 0.86481 0.79038 0.79841 0.81932 1.20609 1.21314 1.19851 1.19926 0.95712 0.93762 0.94245 1.21022 0.99527 0.94151 0.97572 1.21002 0.98819 0.99658 0.93111 1.21287 1.03241 0.93252 0.99877 1.18399 0.98666 0.89649 0.88026 1.84840 1.38416 1.74564 1.33287 1.21278 1.00996 1.00350 0.93699 0.92679 0.91813 0.92927 0.85331 0.95410 0.99311 0.92901 0.85607 0.85987 0.86106 0.76078 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.14 37.16 0.34 -2.31 16 2 C 0.11 2.02 2.79 -68.86 -0.19 1.83 16 3 H 0.08 1.52 7.66 -51.93 -0.40 1.12 16 4 N -0.68 -14.38 5.69 -109.22 -0.62 -15.00 16 5 C 0.19 5.04 5.24 -4.97 -0.03 5.02 16 6 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 10 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 C -0.04 -0.57 4.95 -104.65 -0.52 -1.09 16 15 C -0.10 -1.55 9.32 -39.56 -0.37 -1.92 16 16 C -0.11 -1.40 10.04 -39.60 -0.40 -1.79 16 17 C -0.16 -2.02 9.99 -39.43 -0.39 -2.42 16 18 C 0.10 1.33 6.70 -39.22 -0.26 1.07 16 19 O -0.50 -6.04 13.50 -19.44 -0.26 -6.30 16 20 C -0.14 -2.15 9.61 -39.44 -0.38 -2.53 16 21 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 22 H 0.06 1.06 7.45 -51.93 -0.39 0.68 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.33 6.56 7.81 -39.29 -0.31 6.25 16 25 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 26 H -0.01 -0.29 7.44 -51.93 -0.39 -0.68 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.13 1.82 7.24 -52.49 -0.38 1.44 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.38 2.59 9.06 45.56 0.41 3.00 16 32 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 277.16 15.07 4.18 4.18 Total: -1.00 -31.52 277.16 -7.13 -38.65 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.52 Total: 5.35 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.62 Total: -17.50 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.11 Total: -41.09 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.26 Total: -6.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.52 -7.13 -38.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.708 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds