Wall clock time and date at job start Sun Mar 29 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47182 * 2 1 4 4 N 1.46906 * 109.47135 * 119.99808 * 2 1 3 5 5 C 1.46901 * 110.99831 * 274.99806 * 4 2 1 6 6 C 1.50707 * 109.46754 * 179.97438 * 5 4 2 7 7 H 1.07996 * 120.00110 * 0.02562 * 6 5 4 8 8 C 1.37870 * 119.99523 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00694 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99788 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47231 * 89.99821 * 10 8 6 12 12 H 1.48501 * 109.47024 * 209.99957 * 10 8 6 13 13 H 1.48497 * 109.46839 * 329.99666 * 10 8 6 14 14 C 1.50694 * 109.47155 * 239.99893 * 2 1 3 15 15 C 1.38295 * 119.97322 * 280.00009 * 14 2 1 16 16 C 1.38243 * 120.11401 * 179.70128 * 15 14 2 17 17 C 1.38169 * 120.05492 * 0.02562 * 16 15 14 18 18 C 1.38712 * 119.94061 * 0.02562 * 17 16 15 19 19 O 1.35906 * 120.04954 * 180.02562 * 18 17 16 20 20 C 1.38122 * 119.97595 * 99.72480 * 14 2 1 21 21 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46982 * 300.00446 * 1 2 3 23 23 H 1.08997 * 109.47297 * 60.00043 * 1 2 3 24 24 H 1.00900 * 110.99633 * 38.95391 * 4 2 1 25 25 H 1.08995 * 109.47269 * 299.99749 * 5 4 2 26 26 H 1.08998 * 109.46819 * 60.00295 * 5 4 2 27 27 H 0.97004 * 120.00956 * 179.97438 * 9 8 6 28 28 H 1.07997 * 119.93892 * 359.72353 * 15 14 2 29 29 H 1.07998 * 119.97188 * 180.02562 * 16 15 14 30 30 H 1.08000 * 120.02729 * 180.02562 * 17 16 15 31 31 H 0.96705 * 113.99756 * 90.00200 * 19 18 17 32 32 H 1.08002 * 120.02294 * 0.25466 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5874 -0.5218 3.5561 7 1 2.8370 -1.5697 3.4797 8 6 2.7306 0.1351 4.7598 9 7 2.4271 1.4113 4.8527 10 14 3.3571 -0.7874 6.2585 11 1 4.8380 -0.6932 6.3144 12 1 2.7762 -0.1884 7.4869 13 1 2.9549 -2.2138 6.1655 14 6 2.0323 -0.7104 -1.2304 15 6 2.0665 -2.0925 -1.2647 16 6 2.5210 -2.7473 -2.3942 17 6 2.9428 -2.0219 -3.4919 18 6 2.9105 -0.6355 -3.4596 19 8 3.3244 0.0801 -4.5382 20 6 2.4529 0.0192 -2.3252 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.4495 -1.4979 1.4101 25 1 2.7589 1.0462 2.1182 26 1 1.0871 0.6164 2.5525 27 1 2.5274 1.8735 5.6997 28 1 1.7372 -2.6612 -0.4076 29 1 2.5463 -3.8267 -2.4186 30 1 3.2974 -2.5339 -4.3742 31 1 2.6221 0.2757 -5.1736 32 1 2.4257 1.0986 -2.2981 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:59 Heat of formation + Delta-G solvation = -49.495112 kcal Electronic energy + Delta-G solvation = -14388.684805 eV Core-core repulsion = 11926.903764 eV Total energy + Delta-G solvation = -2461.781040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75992 -38.51605 -36.86090 -34.87081 -32.48415 -30.82823 -29.82980 -27.94345 -24.84217 -23.86903 -23.13161 -21.56839 -19.08020 -18.33081 -17.36754 -16.92771 -16.45995 -16.19833 -15.68698 -15.16552 -15.09104 -14.46419 -14.25009 -13.88365 -13.48517 -13.17367 -13.06096 -12.86315 -12.69669 -12.53208 -12.26188 -12.05076 -11.97671 -11.45674 -11.16259 -10.66973 -9.75332 -9.44282 -9.09361 -8.22321 -6.33506 0.39582 0.44614 1.41500 1.43497 1.54481 2.40141 2.76857 3.11174 3.25309 3.65623 3.89825 4.03197 4.22694 4.29529 4.33225 4.50212 4.63219 4.78979 4.85986 5.00592 5.08489 5.11734 5.21058 5.30428 5.51243 5.55922 5.60052 5.75109 5.99079 6.02876 6.45181 6.71982 6.89569 6.91148 7.37497 8.89167 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044417 B = 0.005574 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.240370 B = 5022.181344 C = 5179.182993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 H 0.061 0.939 4 N -0.680 5.680 5 C 0.211 3.789 6 C -0.535 4.535 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.973 3.027 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.261 1.261 14 C -0.052 4.052 15 C -0.119 4.119 16 C -0.102 4.102 17 C -0.156 4.156 18 C 0.098 3.902 19 O -0.510 6.510 20 C -0.160 4.160 21 H 0.068 0.932 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.337 0.663 25 H -0.006 1.006 26 H -0.032 1.032 27 H 0.265 0.735 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -6.518 -16.280 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 H 0.079 0.921 4 N -0.310 5.310 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.797 3.203 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.186 1.186 14 C -0.053 4.053 15 C -0.138 4.138 16 C -0.120 4.120 17 C -0.174 4.174 18 C 0.054 3.946 19 O -0.323 6.323 20 C -0.179 4.179 21 H 0.087 0.913 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.155 0.845 25 H 0.012 0.988 26 H -0.014 1.014 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.267 0.733 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.140 -6.307 -16.048 17.375 hybrid contribution -1.031 0.409 0.988 1.485 sum -3.170 -5.899 -15.060 16.482 Atomic orbital electron populations 1.22340 0.95084 1.02769 1.02004 1.20470 0.93754 0.96483 0.88856 0.92115 1.60627 1.56394 1.10055 1.03917 1.19203 0.93166 0.91474 0.87867 1.21548 1.43883 0.97276 0.94632 0.91696 1.25942 0.95549 0.95780 1.02389 1.70087 1.49722 1.10711 1.26968 0.85330 0.78375 0.78889 0.77677 1.20091 1.20666 1.18559 1.19731 0.97453 0.94413 0.93656 1.21122 1.00417 0.93639 0.98588 1.21311 0.97355 1.01166 0.92133 1.21610 1.02222 0.92880 1.00684 1.18476 0.97796 0.90271 0.88058 1.84777 1.39802 1.74410 1.33288 1.21355 1.01838 1.00510 0.94210 0.91295 0.93829 0.90696 0.84456 0.98753 1.01423 0.92634 0.85682 0.83088 0.83490 0.73284 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.14 71.98 0.66 -4.36 16 2 C 0.11 4.15 2.79 44.17 0.12 4.27 16 3 H 0.06 2.40 7.66 -2.39 -0.02 2.38 16 4 N -0.68 -29.42 5.69 -499.46 -2.84 -32.26 16 5 C 0.21 11.39 5.24 85.56 0.45 11.84 16 6 C -0.54 -30.76 9.32 25.60 0.24 -30.52 16 7 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -56.94 13.29 21.44 0.28 -56.65 16 10 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 14 C -0.05 -1.63 4.95 -19.88 -0.10 -1.73 16 15 C -0.12 -3.38 9.32 22.28 0.21 -3.17 16 16 C -0.10 -2.35 10.04 22.25 0.22 -2.12 16 17 C -0.16 -3.50 9.99 22.37 0.22 -3.28 16 18 C 0.10 2.50 6.70 22.50 0.15 2.65 16 19 O -0.51 -11.06 13.50 -92.49 -1.25 -12.31 16 20 C -0.16 -4.67 9.61 22.36 0.21 -4.45 16 21 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 22 H 0.04 1.49 7.45 -2.39 -0.02 1.48 16 23 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.34 13.58 7.81 -89.69 -0.70 12.88 16 25 H -0.01 -0.34 8.05 -2.39 -0.02 -0.36 16 26 H -0.03 -1.82 7.44 -2.39 -0.02 -1.84 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.13 3.47 7.24 -2.91 -0.02 3.45 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.41 4.41 9.06 -74.05 -0.67 3.74 16 32 H 0.12 3.47 8.04 -2.91 -0.02 3.45 16 Total: -1.00 -67.92 277.16 0.82 -67.10 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -0.25 Total: 17.89 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 2.85 Total: -30.33 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.56 Total: -88.92 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.25 Total: -12.31 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.92 0.82 -67.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.603 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds