Wall clock time and date at job start Sun Mar 29 2020 22:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.50707 * 109.46656 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99768 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00203 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47118 * 89.99770 * 10 8 6 12 12 H 1.48500 * 109.47037 * 209.99864 * 10 8 6 13 13 H 1.48500 * 109.47075 * 330.00240 * 10 8 6 14 14 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 15 15 C 1.38287 * 119.97186 * 79.72874 * 14 2 1 16 16 C 1.38243 * 120.11308 * 179.72693 * 15 14 2 17 17 C 1.38167 * 120.04982 * 0.54690 * 16 15 14 18 18 C 1.38712 * 119.94589 * 359.72473 * 17 16 15 19 19 O 1.35898 * 120.05098 * 179.97438 * 18 17 16 20 20 C 1.38120 * 119.97283 * 260.00055 * 14 2 1 21 21 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 22 22 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 24 24 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 25 25 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 26 26 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 27 27 H 0.96997 * 120.00560 * 179.97438 * 9 8 6 28 28 H 1.08005 * 119.94575 * 359.97438 * 15 14 2 29 29 H 1.07999 * 119.97577 * 180.25081 * 16 15 14 30 30 H 1.08006 * 120.02444 * 179.70665 * 17 16 15 31 31 H 0.96700 * 114.00215 * 270.01957 * 19 18 17 32 32 H 1.08007 * 120.02604 * 0.02562 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 1 2.8381 -1.5693 -3.4795 8 6 2.7318 0.1355 -4.7595 9 7 2.4264 1.4113 -4.8528 10 14 3.3584 -0.7869 -6.2582 11 1 2.2095 -1.3700 -6.9966 12 1 4.0925 0.1508 -7.1453 13 1 4.2711 -1.8748 -5.8239 14 6 2.0324 -0.7105 1.2304 15 6 2.0613 -2.0925 1.2668 16 6 2.5269 -2.7472 2.3918 17 6 2.9540 -2.0217 3.4874 18 6 2.9207 -0.6354 3.4555 19 8 3.3398 0.0803 4.5321 20 6 2.4583 0.0193 2.3230 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 1.4496 -1.4979 -1.4101 25 1 1.0870 0.6163 -2.5525 26 1 2.7588 1.0464 -2.1182 27 1 2.5275 1.8736 -5.6995 28 1 1.7233 -2.6615 0.4132 29 1 2.5523 -3.8266 2.4162 30 1 3.3133 -2.5337 4.3679 31 1 2.6409 0.2751 5.1713 32 1 2.4310 1.0987 2.2960 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:06 Heat of formation + Delta-G solvation = -49.522324 kcal Electronic energy + Delta-G solvation = -14388.893371 eV Core-core repulsion = 11927.111151 eV Total energy + Delta-G solvation = -2461.782220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76040 -38.51676 -36.86172 -34.87038 -32.48377 -30.83003 -29.82828 -27.94336 -24.84175 -23.86894 -23.13297 -21.56914 -19.08059 -18.33093 -17.36818 -16.92824 -16.46050 -16.19623 -15.68628 -15.16782 -15.09193 -14.46443 -14.24880 -13.88245 -13.48297 -13.18221 -13.06164 -12.86817 -12.65208 -12.56848 -12.26823 -12.04863 -11.97753 -11.45088 -11.16120 -10.67084 -9.75344 -9.44352 -9.09263 -8.22363 -6.33499 0.39588 0.44654 1.41310 1.43211 1.54929 2.40174 2.76851 3.11107 3.25288 3.65733 3.89758 4.03192 4.22720 4.29473 4.33225 4.50095 4.63247 4.78982 4.85958 5.00597 5.08479 5.11723 5.21031 5.30382 5.51241 5.55895 5.60063 5.75064 5.99096 6.02890 6.45242 6.72009 6.89599 6.91196 7.37469 8.89145 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044293 B = 0.005577 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.007210 B = 5019.623313 C = 5175.148897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 H 0.061 0.939 4 N -0.680 5.680 5 C 0.211 3.789 6 C -0.535 4.535 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.973 3.027 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.265 1.265 14 C -0.052 4.052 15 C -0.119 4.119 16 C -0.102 4.102 17 C -0.156 4.156 18 C 0.098 3.902 19 O -0.510 6.510 20 C -0.160 4.160 21 H 0.042 0.958 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.337 0.663 25 H -0.032 1.032 26 H -0.006 1.006 27 H 0.265 0.735 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.408 0.592 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -6.508 16.275 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 H 0.079 0.921 4 N -0.310 5.310 5 C 0.083 3.917 6 C -0.573 4.573 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.797 3.203 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.053 4.053 15 C -0.138 4.138 16 C -0.120 4.120 17 C -0.174 4.174 18 C 0.054 3.946 19 O -0.323 6.323 20 C -0.179 4.179 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.155 0.845 25 H -0.014 1.014 26 H 0.013 0.987 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.267 0.733 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.120 -6.294 16.041 17.362 hybrid contribution -1.048 0.400 -0.988 1.495 sum -3.169 -5.895 15.053 16.474 Atomic orbital electron populations 1.22341 0.95089 1.02772 1.02000 1.20471 0.93756 0.96479 0.88851 0.92114 1.60625 1.56407 1.10053 1.03916 1.19203 0.93158 0.91478 0.87867 1.21548 1.43885 0.97265 0.94646 0.91714 1.25946 0.95568 0.95769 1.02385 1.70088 1.49750 1.10711 1.26935 0.85326 0.78575 0.78228 0.78125 1.19506 1.20836 1.18971 1.19730 0.97454 0.94414 0.93655 1.21121 1.00400 0.93633 0.98610 1.21311 0.97302 1.01167 0.92184 1.21611 1.02232 0.92881 1.00683 1.18474 0.97736 0.90268 0.88118 1.84774 1.39876 1.74412 1.33210 1.21356 1.01797 1.00511 0.94254 0.93841 0.91291 0.90688 0.84453 1.01428 0.98747 0.92634 0.85677 0.83086 0.83492 0.73285 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.02 9.14 71.98 0.66 -4.36 16 2 C 0.11 4.15 2.79 44.17 0.12 4.27 16 3 H 0.06 2.40 7.66 -2.39 -0.02 2.39 16 4 N -0.68 -29.44 5.70 -499.44 -2.85 -32.28 16 5 C 0.21 11.40 5.24 85.56 0.45 11.85 16 6 C -0.54 -30.78 9.32 25.60 0.24 -30.54 16 7 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 8 C 0.00 0.08 5.46 84.65 0.46 0.55 16 9 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 10 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 C -0.05 -1.63 4.95 -19.88 -0.10 -1.73 16 15 C -0.12 -3.38 9.32 22.28 0.21 -3.17 16 16 C -0.10 -2.35 10.04 22.25 0.22 -2.13 16 17 C -0.16 -3.51 9.99 22.37 0.22 -3.29 16 18 C 0.10 2.50 6.70 22.50 0.15 2.66 16 19 O -0.51 -11.07 13.50 -92.40 -1.25 -12.32 16 20 C -0.16 -4.67 9.61 22.36 0.21 -4.46 16 21 H 0.04 1.49 7.45 -2.39 -0.02 1.47 16 22 H 0.07 1.91 8.13 -2.38 -0.02 1.89 16 23 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.34 13.57 7.81 -89.70 -0.70 12.87 16 25 H -0.03 -1.83 7.43 -2.39 -0.02 -1.84 16 26 H -0.01 -0.34 8.06 -2.38 -0.02 -0.35 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.13 3.47 7.25 -2.91 -0.02 3.45 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.41 4.41 9.06 -74.06 -0.67 3.74 16 32 H 0.12 3.48 8.04 -2.91 -0.02 3.45 16 Total: -1.00 -67.97 277.17 0.82 -67.15 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.25 Total: 17.87 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 2.85 Total: -30.35 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -2.56 Total: -88.93 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.25 Total: -12.32 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.97 0.82 -67.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.628 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds