Wall clock time and date at job start Sun Mar 29 2020 21:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36017 * 117.00243 * 2 1 4 4 C 1.38507 * 120.07603 * 359.72109 * 3 2 1 5 5 C 1.38286 * 120.01358 * 180.25601 * 4 3 2 6 6 C 1.38246 * 120.18428 * 0.04534 * 5 4 3 7 7 C 1.50698 * 119.92451 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.15972 * 359.95472 * 6 5 4 9 9 C 1.38721 * 119.97910 * 0.02562 * 8 6 5 10 10 N 1.39967 * 120.09075 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99646 * 0.02562 * 10 9 8 12 12 C 1.50700 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00075 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99893 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00430 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99943 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47077 * 60.00219 * 16 14 12 18 18 H 1.48499 * 109.47294 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47258 * 300.00183 * 16 14 12 20 20 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47278 * 300.00632 * 1 2 3 22 22 H 1.08999 * 109.46845 * 60.00149 * 1 2 3 23 23 H 1.07998 * 119.99298 * 0.25261 * 4 3 2 24 24 H 1.08007 * 119.90524 * 180.02562 * 5 4 3 25 25 H 1.09001 * 109.46953 * 269.97630 * 7 6 5 26 26 H 1.09003 * 109.46566 * 29.97662 * 7 6 5 27 27 H 1.09002 * 109.47531 * 149.97492 * 7 6 5 28 28 H 1.07997 * 120.01097 * 180.02562 * 8 6 5 29 29 H 0.96996 * 119.99995 * 180.02562 * 10 9 8 30 30 H 1.08996 * 109.47327 * 299.99816 * 11 10 9 31 31 H 1.09004 * 109.47205 * 60.00473 * 11 10 9 32 32 H 0.96997 * 120.00371 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 -0.0058 5 6 1.9230 3.6059 -0.0112 6 6 3.3034 3.6812 -0.0117 7 6 3.9830 5.0262 -0.0181 8 6 4.0619 2.5256 -0.0059 9 6 3.4377 1.2867 -0.0001 10 7 4.2034 0.1151 0.0053 11 6 5.6661 0.1961 0.0053 12 6 6.2462 -1.1947 0.0109 13 1 5.5908 -2.0532 0.0145 14 6 7.6136 -1.3714 0.0125 15 7 8.4118 -0.3261 0.0086 16 14 8.3327 -3.0954 0.0202 17 1 7.8779 -3.8268 -1.1895 18 1 9.8154 -3.0134 0.0213 19 1 7.8764 -3.8167 1.2354 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.2152 2.3194 -0.0063 24 1 1.3343 4.5115 -0.0153 25 1 4.1471 5.3454 -1.0473 26 1 3.3523 5.7543 0.4920 27 1 4.9411 4.9517 0.4964 28 1 5.1401 2.5871 -0.0058 29 1 3.7656 -0.7504 0.0089 30 1 6.0008 0.7253 -0.8869 31 1 6.0003 0.7331 0.8931 32 1 9.3737 -0.4504 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032008245.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:12 Heat of formation + Delta-G solvation = -23.243559 kcal Electronic energy + Delta-G solvation = -14550.693707 eV Core-core repulsion = 12090.051019 eV Total energy + Delta-G solvation = -2460.642688 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70708 -37.21339 -35.10037 -32.66866 -31.27023 -29.25914 -27.52616 -26.47502 -25.35221 -22.95994 -20.74124 -20.54896 -17.79577 -16.80554 -15.80215 -15.37410 -15.22490 -14.61259 -14.00751 -13.64710 -13.48697 -13.42714 -12.90451 -12.77911 -12.10836 -11.75826 -11.68966 -11.55843 -11.03276 -10.92781 -10.89678 -10.55011 -10.45821 -10.06316 -9.36219 -9.35932 -8.49760 -7.86315 -6.31094 -6.17019 -4.21595 1.92494 2.17484 3.27210 3.31214 3.33788 3.69414 4.29256 4.36780 4.62794 5.17966 5.20007 5.30824 5.33349 5.37772 5.58297 5.68699 5.72948 5.93868 5.96948 6.18960 6.28957 6.47145 6.67937 6.82607 7.13018 7.22829 7.37918 7.47898 7.62231 7.83460 8.00910 8.39037 8.74898 8.98484 9.44478 10.93699 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.007248 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.369916 B = 3862.223693 C = 4790.844606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.322 6.322 3 C 0.024 3.976 4 C -0.157 4.157 5 C -0.171 4.171 6 C -0.069 4.069 7 C -0.108 4.108 8 C -0.179 4.179 9 C 0.220 3.780 10 N -0.724 5.724 11 C 0.253 3.747 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.064 3.936 15 N -0.890 5.890 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 H 0.091 0.909 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.117 0.883 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.131 0.869 29 H 0.396 0.604 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.428 5.732 -0.046 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C -0.024 4.024 4 C -0.177 4.177 5 C -0.192 4.192 6 C -0.070 4.070 7 C -0.165 4.165 8 C -0.203 4.203 9 C 0.111 3.889 10 N -0.348 5.348 11 C 0.131 3.869 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 H 0.110 0.890 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.135 0.865 24 H 0.128 0.872 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.230 0.770 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.875 5.579 -0.045 13.121 hybrid contribution 0.024 -1.090 -0.001 1.090 sum -11.852 4.489 -0.045 12.673 Atomic orbital electron populations 1.22861 0.79619 1.02948 1.00577 1.85988 1.20222 1.27060 1.90342 1.18444 0.90582 0.84423 1.08985 1.20784 0.98665 0.92044 1.06211 1.20310 0.93652 0.96221 1.09008 1.19507 0.93289 0.94622 0.99539 1.20706 1.00273 0.93708 1.01763 1.20449 1.00117 0.89606 1.10144 1.17456 0.87016 0.88925 0.95526 1.45406 1.07425 1.04212 1.77797 1.19090 0.73622 0.97698 0.96468 1.21186 0.91906 0.91946 1.52568 0.92013 1.24921 0.96776 0.97549 0.94711 1.69933 1.04003 1.29447 1.49450 0.86470 0.77849 0.83837 0.78761 1.20066 1.21056 1.20072 0.89041 0.93397 0.93390 0.86515 0.87152 0.91706 0.92220 0.91712 0.85145 0.76979 0.96232 0.96230 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 9.81 101.05 0.99 1.42 16 2 O -0.32 -5.58 9.74 -19.80 -0.19 -5.77 16 3 C 0.02 0.44 6.70 -39.08 -0.26 0.18 16 4 C -0.16 -2.51 9.04 -39.46 -0.36 -2.86 16 5 C -0.17 -2.66 9.69 -39.56 -0.38 -3.04 16 6 C -0.07 -1.15 5.88 -104.62 -0.62 -1.77 16 7 C -0.11 -1.44 10.01 36.00 0.36 -1.08 16 8 C -0.18 -3.55 8.96 -39.41 -0.35 -3.91 16 9 C 0.22 4.61 6.67 -83.56 -0.56 4.06 16 10 N -0.72 -16.69 5.72 -59.67 -0.34 -17.03 16 11 C 0.25 6.65 4.67 -5.19 -0.02 6.62 16 12 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 13 H 0.06 1.67 7.60 -52.48 -0.40 1.27 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 22 H 0.05 0.51 7.65 -51.93 -0.40 0.12 16 23 H 0.12 1.51 6.30 -52.49 -0.33 1.18 16 24 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.13 2.71 6.74 -52.49 -0.35 2.36 16 29 H 0.40 8.91 7.68 -40.82 -0.31 8.59 16 30 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 31 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 274.15 15.07 4.13 4.13 Total: -1.00 -29.90 274.15 -6.57 -36.47 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.26 Total: 5.23 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.62 Total: -14.06 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.39 Total: -42.25 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.19 Total: -5.77 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.90 -6.57 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032008245.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.222 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds