Wall clock time and date at job start Sun Mar 29 2020 21:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36017 * 117.00243 * 2 1 4 4 C 1.38507 * 120.07603 * 359.72109 * 3 2 1 5 5 C 1.38286 * 120.01358 * 180.25601 * 4 3 2 6 6 C 1.38246 * 120.18428 * 0.04534 * 5 4 3 7 7 C 1.50698 * 119.92451 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.15972 * 359.95472 * 6 5 4 9 9 C 1.38721 * 119.97910 * 0.02562 * 8 6 5 10 10 N 1.39967 * 120.09075 * 179.97438 * 9 8 6 11 11 C 1.46499 * 119.99646 * 0.02562 * 10 9 8 12 12 C 1.50700 * 109.46847 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00075 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99893 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00430 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99943 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47077 * 60.00219 * 16 14 12 18 18 H 1.48499 * 109.47294 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47258 * 300.00183 * 16 14 12 20 20 H 1.08998 * 109.47230 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47278 * 300.00632 * 1 2 3 22 22 H 1.08999 * 109.46845 * 60.00149 * 1 2 3 23 23 H 1.07998 * 119.99298 * 0.25261 * 4 3 2 24 24 H 1.08007 * 119.90524 * 180.02562 * 5 4 3 25 25 H 1.09001 * 109.46953 * 269.97630 * 7 6 5 26 26 H 1.09003 * 109.46566 * 29.97662 * 7 6 5 27 27 H 1.09002 * 109.47531 * 149.97492 * 7 6 5 28 28 H 1.07997 * 120.01097 * 180.02562 * 8 6 5 29 29 H 0.96996 * 119.99995 * 180.02562 * 10 9 8 30 30 H 1.08996 * 109.47327 * 299.99816 * 11 10 9 31 31 H 1.09004 * 109.47205 * 60.00473 * 11 10 9 32 32 H 0.96997 * 120.00371 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2938 2.3745 -0.0058 5 6 1.9230 3.6059 -0.0112 6 6 3.3034 3.6812 -0.0117 7 6 3.9830 5.0262 -0.0181 8 6 4.0619 2.5256 -0.0059 9 6 3.4377 1.2867 -0.0001 10 7 4.2034 0.1151 0.0053 11 6 5.6661 0.1961 0.0053 12 6 6.2462 -1.1947 0.0109 13 1 5.5908 -2.0532 0.0145 14 6 7.6136 -1.3714 0.0125 15 7 8.4118 -0.3261 0.0086 16 14 8.3327 -3.0954 0.0202 17 1 7.8779 -3.8268 -1.1895 18 1 9.8154 -3.0134 0.0213 19 1 7.8764 -3.8167 1.2354 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.2152 2.3194 -0.0063 24 1 1.3343 4.5115 -0.0153 25 1 4.1471 5.3454 -1.0473 26 1 3.3523 5.7543 0.4920 27 1 4.9411 4.9517 0.4964 28 1 5.1401 2.5871 -0.0058 29 1 3.7656 -0.7504 0.0089 30 1 6.0008 0.7253 -0.8869 31 1 6.0003 0.7331 0.8931 32 1 9.3737 -0.4504 0.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032008245.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:12 Heat of formation + Delta-G solvation = -42.522928 kcal Electronic energy + Delta-G solvation = -14551.529723 eV Core-core repulsion = 12090.051019 eV Total energy + Delta-G solvation = -2461.478704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06111 -38.53230 -36.82143 -34.68433 -32.56685 -30.91435 -28.65425 -28.28048 -26.60101 -24.84782 -22.24148 -22.02289 -19.31105 -18.49493 -17.44853 -16.88467 -16.54504 -16.36313 -15.47604 -15.06505 -14.98189 -14.76280 -14.39078 -14.27439 -14.01831 -13.11476 -12.99886 -12.79315 -12.72670 -12.68381 -12.29476 -12.19614 -11.68350 -11.66770 -11.46658 -11.02867 -10.53844 -9.24563 -8.31921 -7.91841 -6.46202 0.54293 0.77448 1.38923 1.42722 1.50997 2.33015 2.50037 2.94163 2.96537 3.03048 3.98213 4.11812 4.31690 4.45179 4.47579 4.58266 4.62766 4.77125 4.85486 4.91652 4.97686 5.04423 5.21285 5.28113 5.34915 5.49158 5.53429 5.84376 5.86872 6.05812 6.37055 6.56901 6.82544 7.16326 7.27900 8.79893 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.007248 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.369916 B = 3862.223693 C = 4790.844606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.022 3.978 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.077 4.077 7 C -0.106 4.106 8 C -0.199 4.199 9 C 0.177 3.823 10 N -0.736 5.736 11 C 0.277 3.723 12 C -0.562 4.562 13 H 0.066 0.934 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.979 3.021 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.266 1.266 20 H 0.112 0.888 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.156 0.844 24 H 0.152 0.848 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.396 0.604 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.638 6.063 -0.056 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.262 6.262 3 C -0.026 4.026 4 C -0.172 4.172 5 C -0.175 4.175 6 C -0.078 4.078 7 C -0.163 4.163 8 C -0.223 4.223 9 C 0.072 3.928 10 N -0.363 5.363 11 C 0.154 3.846 12 C -0.600 4.600 13 H 0.085 0.915 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.802 3.198 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.191 1.191 20 H 0.130 0.870 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.173 0.827 24 H 0.170 0.830 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.229 0.771 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.142 5.950 -0.055 15.343 hybrid contribution 0.545 -1.061 0.001 1.193 sum -13.598 4.888 -0.054 14.450 Atomic orbital electron populations 1.23232 0.76744 1.04981 1.02016 1.85965 1.23217 1.26764 1.90252 1.18575 0.89763 0.85979 1.08296 1.21243 1.00484 0.91045 1.04423 1.20839 0.93160 0.97736 1.05728 1.19903 0.94242 0.94860 0.98748 1.20764 1.00213 0.92431 1.02849 1.20495 0.99252 0.90998 1.11572 1.17820 0.88531 0.88344 0.98138 1.45022 1.05840 1.05109 1.80376 1.18507 0.76002 0.96501 0.93561 1.21556 0.92722 0.92590 1.53090 0.91543 1.25933 0.97042 1.02217 0.93786 1.70067 1.04452 1.31978 1.49902 0.85293 0.77111 0.78124 0.79227 1.19101 1.20239 1.19113 0.87002 0.91824 0.91813 0.82700 0.83038 0.90508 0.89248 0.92570 0.87956 0.77057 0.99293 0.99294 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.35 -11.71 9.74 -93.75 -0.91 -12.63 16 3 C 0.02 0.80 6.70 22.59 0.15 0.95 16 4 C -0.15 -4.38 9.04 22.35 0.20 -4.17 16 5 C -0.15 -4.25 9.69 22.28 0.22 -4.04 16 6 C -0.08 -2.49 5.88 -19.86 -0.12 -2.60 16 7 C -0.11 -2.64 10.01 71.24 0.71 -1.93 16 8 C -0.20 -8.29 8.96 22.38 0.20 -8.09 16 9 C 0.18 7.73 6.67 38.22 0.25 7.99 16 10 N -0.74 -36.06 5.72 -342.69 -1.96 -38.02 16 11 C 0.28 15.69 4.67 85.63 0.40 16.09 16 12 C -0.56 -32.71 9.28 25.60 0.24 -32.47 16 13 H 0.07 3.70 7.60 -2.91 -0.02 3.68 16 14 C 0.01 0.58 5.46 84.65 0.46 1.04 16 15 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 16 Si 0.98 44.10 29.54 68.60 2.03 46.12 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.06 1.14 7.67 -2.39 -0.02 1.12 16 22 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 23 H 0.16 3.22 6.30 -2.91 -0.02 3.20 16 24 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 27 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 28 H 0.10 4.71 6.74 -2.91 -0.02 4.69 16 29 H 0.40 18.77 7.68 -92.71 -0.71 18.06 16 30 H -0.01 -0.65 7.95 -2.39 -0.02 -0.67 16 31 H -0.01 -0.65 7.95 -2.38 -0.02 -0.67 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -67.75 274.15 3.67 -64.08 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.40 Total: 21.59 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 3.83 Total: -25.61 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -1.68 Total: -93.56 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.91 Total: -12.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.75 3.67 -64.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032008245.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.560 kcal (2) G-P(sol) polarization free energy of solvation -67.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds