Wall clock time and date at job start Sun Mar 29 2020 21:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47035 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47157 * 59.99991 * 12 11 10 14 14 O 1.42901 * 109.47147 * 300.00445 * 12 11 10 15 15 C 1.50692 * 109.47453 * 180.02562 * 12 11 10 16 16 C 1.38232 * 120.00243 * 84.72688 * 15 12 11 17 17 C 1.38230 * 120.00538 * 179.79300 * 16 15 12 18 18 C 1.38240 * 119.99726 * 0.43933 * 17 16 15 19 19 C 1.38237 * 119.99883 * 359.81293 * 18 17 16 20 20 C 1.38235 * 119.99918 * 359.97438 * 19 18 17 21 21 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 24 24 H 1.00902 * 111.00068 * 56.04268 * 10 9 7 25 25 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 26 26 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 27 27 H 0.96706 * 113.99785 * 299.99503 * 14 12 11 28 28 H 1.08009 * 119.99549 * 359.97438 * 16 15 12 29 29 H 1.08004 * 120.00839 * 180.27612 * 17 16 15 30 30 H 1.08004 * 120.00237 * 179.83967 * 18 17 16 31 31 H 1.07993 * 119.99848 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.99649 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9070 0.0001 12 6 2.5302 -6.0431 -0.0006 13 1 3.1558 -5.9686 0.8890 14 8 3.3487 -5.9455 -1.1679 15 6 1.8119 -7.3678 -0.0006 16 6 1.3852 -7.9227 -1.1926 17 6 0.7300 -9.1399 -1.1931 18 6 0.4935 -9.7979 -0.0006 19 6 0.9155 -9.2405 1.1920 20 6 1.5746 -8.0254 1.1919 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 2.8406 -3.5487 0.7808 25 1 0.8808 -4.9812 0.8903 26 1 0.8801 -4.9818 -0.8897 27 1 2.8573 -6.0041 -1.9988 28 1 1.5663 -7.4065 -2.1239 29 1 0.4006 -9.5756 -2.1248 30 1 -0.0207 -10.7477 -0.0006 31 1 0.7311 -9.7548 2.1235 32 1 1.9040 -7.5898 2.1237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035102033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:44 Heat of formation + Delta-G solvation = -31.889688 kcal Electronic energy + Delta-G solvation = -14233.077905 eV Core-core repulsion = 11772.060294 eV Total energy + Delta-G solvation = -2461.017612 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61617 -37.00335 -34.64556 -32.42113 -31.48187 -30.89246 -28.17058 -25.61748 -22.92532 -22.59448 -21.31666 -20.84097 -17.54269 -16.57237 -15.83083 -15.67703 -15.07772 -14.59915 -14.40587 -13.90339 -13.60753 -13.45251 -12.99335 -12.56844 -12.34791 -11.77665 -11.42830 -11.31580 -11.13676 -10.79207 -10.78302 -10.63972 -10.09545 -9.69656 -9.18695 -8.98495 -8.70566 -8.47189 -7.27665 -6.02634 -4.04536 1.27878 1.33691 3.33599 3.39028 3.43359 3.70479 4.42747 4.62287 4.70870 4.81130 4.90893 5.03433 5.31638 5.33358 5.36089 5.51242 5.55416 5.66959 5.91835 5.95472 6.13154 6.23541 6.39279 6.42929 6.61418 6.92498 7.22219 7.40335 7.78340 7.89697 8.12552 8.38643 8.60966 9.05026 9.60490 11.08593 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059399 B = 0.004839 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.276491 B = 5784.789441 C = 5903.772879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.680 5.680 11 C 0.034 3.966 12 C 0.149 3.851 13 H 0.102 0.898 14 O -0.541 6.541 15 C -0.106 4.106 16 C -0.111 4.111 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.112 4.112 21 H 0.261 0.739 22 H 0.027 0.973 23 H -0.015 1.015 24 H 0.329 0.671 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.370 0.630 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -17.773 0.377 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.311 5.311 11 C -0.096 4.096 12 C 0.089 3.911 13 H 0.120 0.880 14 O -0.346 6.346 15 C -0.107 4.107 16 C -0.129 4.129 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.138 4.138 20 C -0.130 4.130 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.003 0.997 24 H 0.146 0.854 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.218 0.782 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.466 -17.564 0.135 17.625 hybrid contribution -0.610 0.796 0.552 1.145 sum 0.856 -16.768 0.688 16.804 Atomic orbital electron populations 1.69968 1.06114 1.26791 1.51023 1.24998 0.94881 0.99412 0.95329 0.86461 0.79678 0.82889 0.78156 1.20586 1.21325 1.19802 1.21195 0.93595 0.90171 1.50222 0.91852 1.19574 0.90588 0.87459 0.95687 1.60597 1.20787 1.00576 1.49093 1.22546 0.95260 0.91141 1.00658 1.20868 0.91515 0.88856 0.89840 0.88022 1.86609 1.36648 1.96000 1.15375 1.20739 0.98718 0.97481 0.93778 1.20929 0.98297 0.95964 0.97743 1.21114 0.99079 0.95349 0.98111 1.21135 1.00569 1.00049 0.92760 1.21126 0.98693 0.95892 0.98089 1.21025 0.99184 0.95211 0.97615 0.92924 0.95507 0.99703 0.85424 0.95508 0.91456 0.78225 0.86007 0.86089 0.86286 0.86131 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.19 5.17 5.44 -4.97 -0.03 5.14 16 10 N -0.68 -14.89 6.36 -115.06 -0.73 -15.62 16 11 C 0.03 0.61 5.33 -3.82 -0.02 0.59 16 12 C 0.15 2.22 3.42 -27.88 -0.10 2.12 16 13 H 0.10 1.48 8.05 -51.93 -0.42 1.06 16 14 O -0.54 -8.51 13.00 -35.23 -0.46 -8.97 16 15 C -0.11 -1.40 5.00 -104.63 -0.52 -1.92 16 16 C -0.11 -1.34 9.33 -39.59 -0.37 -1.71 16 17 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 18 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 19 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 20 C -0.11 -1.35 9.68 -39.58 -0.38 -1.74 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16 24 H 0.33 6.94 8.72 -39.29 -0.34 6.60 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.37 4.77 7.39 45.56 0.34 5.11 16 28 H 0.12 1.28 6.62 -52.48 -0.35 0.93 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -31.97 278.33 -8.01 -39.98 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.70 Total: 6.14 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -3.03 Total: -16.18 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.00 Total: -42.08 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.46 Total: -8.97 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.97 -8.01 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035102033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.088 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds