Wall clock time and date at job start Sun Mar 29 2020 21:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99789 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47035 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.47157 * 59.99991 * 12 11 10 14 14 O 1.42901 * 109.47147 * 300.00445 * 12 11 10 15 15 C 1.50692 * 109.47453 * 180.02562 * 12 11 10 16 16 C 1.38232 * 120.00243 * 84.72688 * 15 12 11 17 17 C 1.38230 * 120.00538 * 179.79300 * 16 15 12 18 18 C 1.38240 * 119.99726 * 0.43933 * 17 16 15 19 19 C 1.38237 * 119.99883 * 359.81293 * 18 17 16 20 20 C 1.38235 * 119.99918 * 359.97438 * 19 18 17 21 21 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 24 24 H 1.00902 * 111.00068 * 56.04268 * 10 9 7 25 25 H 1.08996 * 109.47424 * 299.99656 * 11 10 9 26 26 H 1.09002 * 109.47411 * 60.00282 * 11 10 9 27 27 H 0.96706 * 113.99785 * 299.99503 * 14 12 11 28 28 H 1.08009 * 119.99549 * 359.97438 * 16 15 12 29 29 H 1.08004 * 120.00839 * 180.27612 * 17 16 15 30 30 H 1.08004 * 120.00237 * 179.83967 * 18 17 16 31 31 H 1.07993 * 119.99848 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.99649 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5053 -4.9070 0.0001 12 6 2.5302 -6.0431 -0.0006 13 1 3.1558 -5.9686 0.8890 14 8 3.3487 -5.9455 -1.1679 15 6 1.8119 -7.3678 -0.0006 16 6 1.3852 -7.9227 -1.1926 17 6 0.7300 -9.1399 -1.1931 18 6 0.4935 -9.7979 -0.0006 19 6 0.9155 -9.2405 1.1920 20 6 1.5746 -8.0254 1.1919 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 2.8406 -3.5487 0.7808 25 1 0.8808 -4.9812 0.8903 26 1 0.8801 -4.9818 -0.8897 27 1 2.8573 -6.0041 -1.9988 28 1 1.5663 -7.4065 -2.1239 29 1 0.4006 -9.5756 -2.1248 30 1 -0.0207 -10.7477 -0.0006 31 1 0.7311 -9.7548 2.1235 32 1 1.9040 -7.5898 2.1237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035102033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:43 Heat of formation + Delta-G solvation = -55.113014 kcal Electronic energy + Delta-G solvation = -14234.084944 eV Core-core repulsion = 11772.060294 eV Total energy + Delta-G solvation = -2462.024651 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58386 -38.22747 -36.41909 -34.44175 -32.58821 -31.73756 -29.84561 -27.33093 -24.39578 -23.54128 -23.15226 -21.90684 -18.76977 -18.41165 -17.20989 -16.72087 -16.65579 -16.03409 -15.84816 -15.11059 -15.04907 -14.54294 -14.26565 -14.18787 -13.65332 -13.40874 -13.07754 -12.68629 -12.63294 -12.54178 -12.09097 -12.07814 -11.84582 -11.44653 -10.89154 -10.67471 -9.83112 -9.66002 -9.13645 -8.24119 -6.35682 0.39286 0.49148 1.41290 1.43382 1.54808 2.39603 2.81841 3.09221 3.36318 3.57851 3.89027 4.02690 4.09137 4.17038 4.26398 4.30262 4.58002 4.63102 4.71298 4.92433 5.03800 5.05775 5.15555 5.22342 5.54882 5.59466 5.60630 5.66310 5.98881 6.09885 6.39560 6.64945 6.80116 6.88084 7.35540 8.87641 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.059399 B = 0.004839 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.276491 B = 5784.789441 C = 5903.772879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.679 5.679 11 C 0.038 3.962 12 C 0.163 3.837 13 H 0.104 0.896 14 O -0.556 6.556 15 C -0.126 4.126 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.126 4.126 21 H 0.266 0.734 22 H -0.001 1.001 23 H -0.040 1.040 24 H 0.335 0.665 25 H 0.025 0.975 26 H 0.062 0.938 27 H 0.381 0.619 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -18.618 0.423 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.310 5.310 11 C -0.092 4.092 12 C 0.103 3.897 13 H 0.122 0.878 14 O -0.362 6.362 15 C -0.127 4.127 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.144 4.144 19 C -0.143 4.143 20 C -0.144 4.144 21 H 0.074 0.926 22 H 0.017 0.983 23 H -0.022 1.022 24 H 0.152 0.848 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.230 0.770 28 H 0.148 0.852 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.982 -18.437 0.177 18.544 hybrid contribution -0.821 0.948 0.526 1.360 sum 1.161 -17.489 0.703 17.542 Atomic orbital electron populations 1.70093 1.07849 1.28083 1.51490 1.25972 0.95804 1.03459 0.94444 0.85295 0.78497 0.77764 0.78513 1.19803 1.20554 1.18715 1.21543 0.93834 0.91400 1.50743 0.91761 1.19226 0.90614 0.89003 0.93139 1.60471 1.20087 1.01042 1.49388 1.22604 0.96025 0.90288 1.00278 1.20653 0.90585 0.88710 0.89716 0.87846 1.86570 1.37436 1.96056 1.16186 1.20592 1.00203 0.96977 0.94942 1.21157 0.98602 0.96824 0.97727 1.21450 0.98456 0.94810 0.99521 1.21548 0.99688 1.00887 0.92325 1.21461 0.97964 0.95380 0.99504 1.21246 0.99617 0.96017 0.97554 0.92551 0.98252 1.02215 0.84823 0.95649 0.91964 0.76999 0.85230 0.83796 0.83526 0.83773 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.98 44.85 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.39 9.32 25.60 0.24 -31.15 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.47 5.44 85.56 0.47 11.94 16 10 N -0.68 -30.29 6.36 -517.92 -3.29 -33.58 16 11 C 0.04 1.38 5.33 86.31 0.46 1.84 16 12 C 0.16 4.82 3.42 29.85 0.10 4.93 16 13 H 0.10 2.98 8.05 -2.38 -0.02 2.96 16 14 O -0.56 -17.28 13.00 -148.98 -1.94 -19.21 16 15 C -0.13 -3.24 5.00 -19.87 -0.10 -3.34 16 16 C -0.13 -2.87 9.33 22.27 0.21 -2.66 16 17 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 18 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 19 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 20 C -0.13 -2.90 9.68 22.27 0.22 -2.69 16 21 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 22 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 23 H -0.04 -2.35 8.14 -2.38 -0.02 -2.36 16 24 H 0.33 14.27 8.72 -89.69 -0.78 13.49 16 25 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.38 9.71 7.39 -74.05 -0.55 9.16 16 28 H 0.13 2.62 6.62 -2.91 -0.02 2.60 16 29 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 31 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -68.17 278.33 -0.41 -68.58 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -0.21 Total: 21.25 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 2.72 Total: -26.94 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -3.01 Total: -90.55 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.94 Total: -19.21 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.17 -0.41 -68.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035102033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.467 kcal (2) G-P(sol) polarization free energy of solvation -68.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds