Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47275 * 240.00437 * 3 2 1 5 5 H 1.48507 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46852 * 119.99997 * 3 2 1 7 7 C 1.38813 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00162 * 157.07743 * 7 2 1 9 9 N 1.36939 * 119.99408 * 337.07903 * 7 2 1 10 10 C 1.46503 * 120.00333 * 325.44358 * 9 7 2 11 11 C 1.52994 * 109.47289 * 275.11598 * 10 9 7 12 12 O 1.42900 * 109.47060 * 65.00079 * 11 10 9 13 13 C 1.46500 * 120.00043 * 145.45546 * 9 7 2 14 14 C 1.50694 * 109.47664 * 89.99209 * 13 9 7 15 15 C 1.38239 * 119.99906 * 90.00137 * 14 13 9 16 16 C 1.38231 * 119.99826 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.00336 * 359.97438 * 16 15 14 18 18 C 1.38234 * 120.00091 * 0.27379 * 17 16 15 19 19 C 1.38237 * 120.00107 * 269.98008 * 14 13 9 20 20 H 0.97000 * 119.99842 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46346 * 35.11645 * 10 9 7 22 22 H 1.09002 * 109.47053 * 155.10880 * 10 9 7 23 23 H 1.09003 * 109.46799 * 184.99696 * 11 10 9 24 24 H 1.08992 * 109.47462 * 304.99907 * 11 10 9 25 25 H 0.96705 * 114.00069 * 180.02562 * 12 11 10 26 26 H 1.09004 * 109.46616 * 329.98827 * 13 9 7 27 27 H 1.08996 * 109.47007 * 209.99886 * 13 9 7 28 28 H 1.08000 * 119.99679 * 359.97438 * 15 14 13 29 29 H 1.08001 * 119.99733 * 179.97438 * 16 15 14 30 30 H 1.08006 * 120.00300 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.00447 * 179.72330 * 18 17 16 32 32 H 1.08000 * 120.00111 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0263 -1.2388 -0.3648 9 7 1.4067 -2.3414 0.4609 10 6 0.4573 -2.2680 1.5742 11 6 1.2210 -2.3087 2.8993 12 8 2.0331 -1.1388 3.0172 13 6 1.7104 -3.6337 -0.1587 14 6 2.8795 -4.2681 0.5495 15 6 2.6631 -5.0995 1.6326 16 6 3.7355 -5.6818 2.2819 17 6 5.0242 -5.4333 1.8480 18 6 5.2409 -4.5978 0.7682 19 6 4.1682 -4.0190 0.1160 20 1 -0.4850 0.8401 0.0004 21 1 -0.1079 -1.3382 1.5090 22 1 -0.2281 -3.1141 1.5237 23 1 0.5119 -2.3437 3.7264 24 1 1.8548 -3.1951 2.9263 25 1 2.5472 -1.0976 3.8352 26 1 1.9599 -3.4833 -1.2091 27 1 0.8411 -4.2867 -0.0819 28 1 1.6562 -5.2940 1.9713 29 1 3.5665 -6.3310 3.1283 30 1 5.8621 -5.8886 2.3551 31 1 6.2480 -4.4001 0.4319 32 1 4.3373 -3.3695 -0.7301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035243302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = -1.074986 kcal Electronic energy + Delta-G solvation = -15337.527624 eV Core-core repulsion = 12877.846238 eV Total energy + Delta-G solvation = -2459.681386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.74785 -36.37756 -34.64211 -31.90599 -30.44352 -30.17552 -28.00217 -25.46713 -23.00900 -22.01745 -20.97948 -19.93559 -16.65170 -16.44696 -16.19756 -14.72401 -14.70722 -14.49464 -13.89723 -13.50936 -13.04227 -12.91492 -12.59962 -12.29532 -11.89748 -11.38384 -11.05011 -10.77248 -10.72507 -10.48632 -10.30377 -10.13340 -9.93754 -9.62569 -8.99198 -8.41011 -8.36035 -8.08235 -6.50575 -5.62125 -3.17836 1.90081 1.92927 3.49786 3.54697 3.62790 4.30024 4.68187 5.33505 5.35861 5.37533 5.46569 5.52377 5.66432 5.74602 5.99194 6.06661 6.22954 6.27108 6.44149 6.50787 6.60262 6.67890 6.79768 6.81377 6.94835 7.02028 7.33763 7.55244 7.78577 7.94941 8.55348 8.73386 9.29969 9.95965 10.47661 11.37787 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.009976 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.040888 B = 2805.990710 C = 3005.745935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.020 3.980 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.055 0.945 9 N -0.567 5.567 10 C 0.135 3.865 11 C 0.058 3.942 12 O -0.538 6.538 13 C 0.173 3.827 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.129 4.129 17 C -0.141 4.141 18 C -0.125 4.125 19 C -0.104 4.104 20 H 0.252 0.748 21 H 0.107 0.893 22 H 0.036 0.964 23 H 0.013 0.987 24 H 0.029 0.971 25 H 0.345 0.655 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 -9.068 4.364 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.073 0.927 9 N -0.286 5.286 10 C 0.009 3.991 11 C -0.022 4.022 12 O -0.339 6.339 13 C 0.047 3.953 14 C -0.075 4.075 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.159 4.159 18 C -0.143 4.143 19 C -0.123 4.123 20 H 0.062 0.938 21 H 0.124 0.876 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.047 0.953 25 H 0.188 0.812 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.700 -8.773 3.718 10.625 hybrid contribution 0.829 0.709 0.928 1.432 sum 5.529 -8.065 4.646 10.826 Atomic orbital electron populations 1.69924 1.05666 1.25516 1.52679 1.24892 0.94785 0.98338 0.99899 0.86434 0.79201 0.83409 0.77956 1.21314 1.22070 1.20801 1.18756 0.94316 0.85760 1.37816 0.92714 1.43630 1.49855 1.01227 1.33899 1.21153 0.91380 1.02882 0.83692 1.23086 0.92740 0.87156 0.99191 1.86897 1.61676 1.43005 1.42322 1.19966 0.91969 0.88074 0.95326 1.21200 0.97054 0.93620 0.95637 1.20967 0.98287 0.98019 0.96298 1.20999 0.93070 1.00728 0.99878 1.20920 0.96522 1.00377 0.98078 1.21071 0.98515 0.98111 0.96635 1.21076 0.92265 0.98728 1.00210 0.93818 0.87600 0.94577 0.96854 0.95262 0.81224 0.92306 0.93881 0.87002 0.87184 0.87229 0.87025 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 11.29 55.49 0.63 -25.71 16 2 C 0.02 0.57 4.99 -17.43 -0.09 0.48 16 3 Si 0.90 22.92 29.61 -169.99 -5.03 17.88 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.59 8.72 -15.06 -0.13 -6.72 16 8 H 0.06 1.54 7.93 -52.49 -0.42 1.12 16 9 N -0.57 -14.12 2.44 -174.61 -0.43 -14.55 16 10 C 0.14 3.22 5.83 -4.04 -0.02 3.20 16 11 C 0.06 1.23 7.39 37.15 0.27 1.51 16 12 O -0.54 -12.31 12.89 -35.23 -0.45 -12.77 16 13 C 0.17 3.65 5.83 -5.20 -0.03 3.62 16 14 C -0.07 -1.37 5.36 -104.62 -0.56 -1.93 16 15 C -0.12 -1.99 7.80 -39.58 -0.31 -2.30 16 16 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 17 C -0.14 -2.09 10.05 -39.59 -0.40 -2.48 16 18 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 19 C -0.10 -1.90 9.70 -39.58 -0.38 -2.29 16 20 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 21 H 0.11 2.93 5.34 -51.93 -0.28 2.65 16 22 H 0.04 0.78 7.84 -51.93 -0.41 0.37 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.03 0.59 5.96 -51.93 -0.31 0.28 16 25 H 0.35 6.06 9.12 45.56 0.42 6.48 16 26 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 27 H 0.04 0.84 7.80 -51.93 -0.41 0.44 16 28 H 0.11 1.78 8.05 -52.49 -0.42 1.36 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 272.02 15.07 4.10 4.10 Total: -1.00 -31.35 272.02 -7.12 -38.47 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -3.49 Total: 4.21 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.44 Total: -11.64 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.20 Total: -40.25 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.45 Total: -12.77 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.88 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.35 -7.12 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035243302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.395 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds