Wall clock time and date at job start Sun Mar 29 2020 21:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48496 * 109.47275 * 240.00437 * 3 2 1 5 5 H 1.48507 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46852 * 119.99997 * 3 2 1 7 7 C 1.38813 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00162 * 157.07743 * 7 2 1 9 9 N 1.36939 * 119.99408 * 337.07903 * 7 2 1 10 10 C 1.46503 * 120.00333 * 325.44358 * 9 7 2 11 11 C 1.52994 * 109.47289 * 275.11598 * 10 9 7 12 12 O 1.42900 * 109.47060 * 65.00079 * 11 10 9 13 13 C 1.46500 * 120.00043 * 145.45546 * 9 7 2 14 14 C 1.50694 * 109.47664 * 89.99209 * 13 9 7 15 15 C 1.38239 * 119.99906 * 90.00137 * 14 13 9 16 16 C 1.38231 * 119.99826 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.00336 * 359.97438 * 16 15 14 18 18 C 1.38234 * 120.00091 * 0.27379 * 17 16 15 19 19 C 1.38237 * 120.00107 * 269.98008 * 14 13 9 20 20 H 0.97000 * 119.99842 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46346 * 35.11645 * 10 9 7 22 22 H 1.09002 * 109.47053 * 155.10880 * 10 9 7 23 23 H 1.09003 * 109.46799 * 184.99696 * 11 10 9 24 24 H 1.08992 * 109.47462 * 304.99907 * 11 10 9 25 25 H 0.96705 * 114.00069 * 180.02562 * 12 11 10 26 26 H 1.09004 * 109.46616 * 329.98827 * 13 9 7 27 27 H 1.08996 * 109.47007 * 209.99886 * 13 9 7 28 28 H 1.08000 * 119.99679 * 359.97438 * 15 14 13 29 29 H 1.08001 * 119.99733 * 179.97438 * 16 15 14 30 30 H 1.08006 * 120.00300 * 180.02562 * 17 16 15 31 31 H 1.07999 * 120.00447 * 179.72330 * 18 17 16 32 32 H 1.08000 * 120.00111 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0263 -1.2388 -0.3648 9 7 1.4067 -2.3414 0.4609 10 6 0.4573 -2.2680 1.5742 11 6 1.2210 -2.3087 2.8993 12 8 2.0331 -1.1388 3.0172 13 6 1.7104 -3.6337 -0.1587 14 6 2.8795 -4.2681 0.5495 15 6 2.6631 -5.0995 1.6326 16 6 3.7355 -5.6818 2.2819 17 6 5.0242 -5.4333 1.8480 18 6 5.2409 -4.5978 0.7682 19 6 4.1682 -4.0190 0.1160 20 1 -0.4850 0.8401 0.0004 21 1 -0.1079 -1.3382 1.5090 22 1 -0.2281 -3.1141 1.5237 23 1 0.5119 -2.3437 3.7264 24 1 1.8548 -3.1951 2.9263 25 1 2.5472 -1.0976 3.8352 26 1 1.9599 -3.4833 -1.2091 27 1 0.8411 -4.2867 -0.0819 28 1 1.6562 -5.2940 1.9713 29 1 3.5665 -6.3310 3.1283 30 1 5.8621 -5.8886 2.3551 31 1 6.2480 -4.4001 0.4319 32 1 4.3373 -3.3695 -0.7301 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035243302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:01 Heat of formation + Delta-G solvation = -21.571338 kcal Electronic energy + Delta-G solvation = -15338.416412 eV Core-core repulsion = 12877.846238 eV Total energy + Delta-G solvation = -2460.570175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08820 -38.10703 -36.42222 -33.74617 -31.92406 -31.63677 -29.75330 -27.27507 -24.79126 -23.28953 -22.55732 -21.60040 -18.58645 -18.17388 -17.51261 -16.76428 -16.03369 -15.97108 -15.52749 -15.38619 -14.77353 -14.19079 -14.14962 -13.85824 -13.34311 -13.26048 -12.72700 -12.68059 -12.61903 -12.11188 -11.97969 -11.84454 -11.65723 -11.53645 -10.65260 -10.42222 -9.65129 -9.46777 -8.52413 -7.71163 -5.30613 0.63199 0.64728 1.44710 1.50107 1.57345 2.57935 3.02967 3.37680 3.76516 3.90222 4.10205 4.19538 4.29303 4.39369 4.56984 4.60884 4.77140 4.80962 4.88480 4.92028 5.03245 5.13186 5.28816 5.31107 5.69883 5.71325 5.74361 5.86924 5.97572 6.28842 6.52281 7.18968 7.27212 7.95045 8.42863 9.22904 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.009976 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.040888 B = 2805.990710 C = 3005.745935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.027 4.027 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.287 1.287 7 C -0.233 4.233 8 H 0.043 0.957 9 N -0.581 5.581 10 C 0.131 3.869 11 C 0.067 3.933 12 O -0.571 6.571 13 C 0.174 3.826 14 C -0.092 4.092 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.134 4.134 18 C -0.129 4.129 19 C -0.128 4.128 20 H 0.247 0.753 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.368 0.632 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 -10.603 5.951 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.224 4.224 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.061 0.939 9 N -0.301 5.301 10 C 0.005 3.995 11 C -0.013 4.013 12 O -0.375 6.375 13 C 0.049 3.951 14 C -0.095 4.095 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.152 4.152 18 C -0.146 4.146 19 C -0.147 4.147 20 H 0.056 0.944 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.214 0.786 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.152 0.848 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.124 -10.336 5.314 13.137 hybrid contribution 0.452 1.061 0.457 1.240 sum 6.576 -9.275 5.770 12.750 Atomic orbital electron populations 1.70047 1.06604 1.25479 1.54524 1.25444 0.95382 1.00649 1.00881 0.85646 0.78095 0.80652 0.77772 1.20502 1.22207 1.21340 1.18837 0.93815 0.87068 1.36570 0.93896 1.43769 1.49946 1.01749 1.34655 1.21110 0.91653 1.01680 0.85086 1.22925 0.93046 0.87011 0.98283 1.86821 1.62455 1.43931 1.44315 1.19976 0.93557 0.86914 0.94672 1.20898 0.96153 0.95445 0.97003 1.21105 0.99595 0.97786 0.95738 1.21385 0.92538 1.00147 1.00185 1.21364 0.97667 0.99082 0.97129 1.21351 0.98814 0.97758 0.96727 1.21123 0.93104 0.99709 1.00727 0.94411 0.91321 0.92887 0.94185 0.93998 0.78632 0.93877 0.92661 0.86120 0.83897 0.83754 0.84825 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 11.29 21.65 0.24 -55.22 16 2 C -0.03 -1.59 4.99 84.86 0.42 -1.16 16 3 Si 0.95 47.74 29.61 68.60 2.03 49.77 16 4 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 7 C -0.23 -13.13 8.72 84.03 0.73 -12.39 16 8 H 0.04 2.48 7.93 -2.91 -0.02 2.46 16 9 N -0.58 -29.16 2.44 -706.35 -1.72 -30.88 16 10 C 0.13 6.21 5.83 86.38 0.50 6.71 16 11 C 0.07 2.70 7.39 71.98 0.53 3.23 16 12 O -0.57 -25.45 12.89 -148.98 -1.92 -27.37 16 13 C 0.17 7.41 5.83 85.63 0.50 7.91 16 14 C -0.09 -3.43 5.36 -19.87 -0.11 -3.54 16 15 C -0.12 -3.89 7.80 22.27 0.17 -3.71 16 16 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 17 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 18 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 19 C -0.13 -4.60 9.70 22.27 0.22 -4.38 16 20 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 21 H 0.07 3.86 5.34 -2.38 -0.01 3.85 16 22 H 0.05 2.25 7.84 -2.39 -0.02 2.24 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.58 5.96 -2.39 -0.01 1.57 16 25 H 0.37 12.24 9.12 -74.05 -0.68 11.56 16 26 H 0.04 1.90 7.98 -2.38 -0.02 1.88 16 27 H 0.06 2.15 7.80 -2.39 -0.02 2.13 16 28 H 0.12 3.51 8.05 -2.91 -0.02 3.48 16 29 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.10 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -67.44 272.02 2.71 -64.73 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.43 Total: 16.08 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 3.65 Total: -17.12 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -1.48 Total: -86.09 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.92 Total: -27.37 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -67.44 2.71 -64.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035243302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.161 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds