Wall clock time and date at job start Sun Mar 29 2020 21:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 N 1.46495 * 109.46877 * 120.00104 * 2 1 3 5 5 C 1.39676 * 120.00065 * 85.00087 * 4 2 1 6 6 C 1.38998 * 120.04105 * 359.97246 * 5 4 2 7 7 C 1.38152 * 120.06618 * 180.02562 * 6 5 4 8 8 C 1.38174 * 120.14008 * 359.72675 * 7 6 5 9 9 C 1.38921 * 120.07677 * 0.55429 * 8 7 6 10 10 O 1.35751 * 120.02898 * 179.72009 * 9 8 7 11 11 C 1.34829 * 116.99660 * 174.18611 * 10 9 8 12 12 H 1.08001 * 120.00139 * 5.05352 * 11 10 9 13 13 C 1.38657 * 119.99856 * 185.05736 * 11 10 9 14 14 N 1.31559 * 119.99982 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00027 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46813 * 90.00246 * 15 13 11 17 17 H 1.48495 * 109.47176 * 210.00133 * 15 13 11 18 18 H 1.48499 * 109.47156 * 330.00610 * 15 13 11 19 19 C 1.38756 * 120.03808 * 179.97438 * 5 4 2 20 20 H 1.09002 * 109.47153 * 300.00040 * 1 2 3 21 21 H 1.09000 * 109.47149 * 59.99867 * 1 2 3 22 22 H 1.08998 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46753 * 239.99848 * 2 1 3 24 24 H 1.08994 * 109.46937 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47135 * 300.00141 * 3 2 1 26 26 H 1.09002 * 109.47058 * 59.99901 * 3 2 1 27 27 H 0.96996 * 120.00233 * 264.99493 * 4 2 1 28 28 H 1.08000 * 119.96982 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.93052 * 179.97438 * 7 6 5 30 30 H 1.07994 * 119.96332 * 180.29346 * 8 7 6 31 31 H 0.96998 * 119.99940 * 179.97438 * 14 13 11 32 32 H 1.07995 * 120.07467 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1517 -2.0810 1.1943 6 6 1.8208 -2.8102 0.0581 7 6 1.9521 -4.1855 0.0559 8 6 2.4177 -4.8399 1.1803 9 6 2.7445 -4.1174 2.3210 10 8 3.1964 -4.7618 3.4270 11 6 3.6093 -3.9950 4.4563 12 1 3.4956 -2.9220 4.4099 13 6 4.1800 -4.5840 5.5743 14 7 4.5824 -3.8359 6.5788 15 14 4.3762 -6.4399 5.6547 16 1 5.6938 -6.8235 5.0871 17 1 4.2981 -6.8851 7.0693 18 1 3.2927 -7.0866 4.8717 19 6 2.6146 -2.7359 2.3266 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.2490 -0.1824 1.9894 28 1 1.4608 -2.3013 -0.8238 29 1 1.6940 -4.7500 -0.8279 30 1 2.5236 -5.9146 1.1738 31 1 4.9813 -4.2479 7.3611 32 1 2.8727 -2.1717 3.2106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:42 Heat of formation + Delta-G solvation = -6.749877 kcal Electronic energy + Delta-G solvation = -14588.932490 eV Core-core repulsion = 12129.005022 eV Total energy + Delta-G solvation = -2459.927468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22436 -37.56671 -35.54337 -32.35029 -31.74492 -29.02538 -27.73348 -27.12619 -25.10826 -22.00312 -21.62913 -19.92877 -17.77506 -17.56522 -15.69182 -15.43290 -15.02918 -14.33587 -14.07281 -13.75710 -13.53033 -13.18045 -12.91487 -12.32574 -12.31086 -12.14328 -11.91138 -11.78798 -11.24014 -10.99842 -10.84611 -10.73523 -10.47055 -10.15898 -9.43562 -9.36879 -8.77396 -7.42887 -6.79410 -6.35353 -4.01957 2.33806 2.51120 3.26547 3.30155 3.45595 3.80410 4.29662 4.66489 4.87563 4.98620 5.09625 5.19693 5.23739 5.53703 5.62474 5.73074 5.76359 5.86662 5.96861 6.06970 6.19293 6.28551 6.38074 6.56755 6.63277 7.02256 7.27081 7.32460 7.57714 7.85796 7.98302 8.11321 8.25553 9.00940 9.65980 10.72671 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039911 B = 0.006893 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.400278 B = 4060.933313 C = 4624.192606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.146 3.854 3 C -0.160 4.160 4 N -0.749 5.749 5 C 0.250 3.750 6 C -0.274 4.274 7 C -0.041 4.041 8 C -0.239 4.239 9 C 0.196 3.804 10 O -0.219 6.219 11 C -0.386 4.386 12 H 0.105 0.895 13 C 0.062 3.938 14 N -0.884 5.884 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.259 1.259 19 C -0.292 4.292 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.395 0.605 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.278 0.722 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 5.999 -11.908 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.041 3.959 3 C -0.217 4.217 4 N -0.380 5.380 5 C 0.148 3.852 6 C -0.297 4.297 7 C -0.060 4.060 8 C -0.260 4.260 9 C 0.143 3.857 10 O -0.124 6.124 11 C -0.462 4.462 12 H 0.122 0.878 13 C -0.141 4.141 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.183 1.183 19 C -0.316 4.316 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.229 0.771 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.467 5.820 -11.806 14.253 hybrid contribution 0.224 -0.352 0.578 0.712 sum -5.243 5.468 -11.229 13.545 Atomic orbital electron populations 1.22308 0.96452 1.02533 1.01420 1.20762 0.93353 0.92482 0.89339 1.22056 1.01718 0.95679 1.02294 1.44703 1.74152 1.03674 1.15467 1.17508 0.91623 0.82773 0.93250 1.20173 1.17443 0.94053 0.98005 1.20376 0.95836 0.93509 0.96294 1.20020 1.13884 0.99277 0.92809 1.18806 0.90459 0.90125 0.86325 1.83580 1.71397 1.35948 1.21452 1.20758 1.39436 0.92482 0.93485 0.87750 1.24462 0.95324 1.00117 0.94189 1.69649 1.39814 1.36105 1.06654 0.86187 0.79644 0.83845 0.77259 1.19940 1.20897 1.18340 1.20623 1.16810 0.94622 0.99504 0.92654 0.92473 0.91997 0.90572 0.92080 0.91535 0.92319 0.77082 0.87550 0.87094 0.86987 0.91195 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.43 37.16 0.35 -1.53 16 2 C 0.15 1.76 2.88 -67.93 -0.20 1.56 16 3 C -0.16 -1.54 9.38 37.16 0.35 -1.19 16 4 N -0.75 -11.45 5.25 -52.19 -0.27 -11.73 16 5 C 0.25 4.72 6.63 -83.81 -0.56 4.16 16 6 C -0.27 -4.81 8.85 -39.33 -0.35 -5.16 16 7 C -0.04 -0.74 10.03 -39.64 -0.40 -1.13 16 8 C -0.24 -4.98 9.99 -39.35 -0.39 -5.38 16 9 C 0.20 4.71 6.64 -39.13 -0.26 4.45 16 10 O -0.22 -5.96 8.58 0.05 0.00 -5.96 16 11 C -0.39 -11.14 9.95 30.89 0.31 -10.83 16 12 H 0.11 3.08 5.43 -52.49 -0.29 2.80 16 13 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 14 N -0.88 -25.95 13.96 55.48 0.77 -25.17 16 15 Si 0.90 22.13 28.62 -169.99 -4.86 17.26 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.29 -6.54 9.01 -39.20 -0.35 -6.89 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.78 7.70 -51.93 -0.40 0.38 16 23 H 0.08 0.93 6.48 -51.93 -0.34 0.60 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.40 5.80 8.61 -40.82 -0.35 5.45 16 28 H 0.11 1.61 6.10 -52.49 -0.32 1.28 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.28 7.54 8.31 -40.82 -0.34 7.21 16 32 H 0.13 3.05 5.64 -52.49 -0.30 2.76 16 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -30.10 271.11 -5.95 -36.05 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.08 Total: 5.72 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.59 Total: -20.26 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.50 Total: -36.90 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: 0.00 Total: -5.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.10 -5.95 -36.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.300 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds