Wall clock time and date at job start Sun Mar 29 2020 21:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 N 1.46495 * 109.46877 * 120.00104 * 2 1 3 5 5 C 1.39676 * 120.00065 * 85.00087 * 4 2 1 6 6 C 1.38998 * 120.04105 * 359.97246 * 5 4 2 7 7 C 1.38152 * 120.06618 * 180.02562 * 6 5 4 8 8 C 1.38174 * 120.14008 * 359.72675 * 7 6 5 9 9 C 1.38921 * 120.07677 * 0.55429 * 8 7 6 10 10 O 1.35751 * 120.02898 * 179.72009 * 9 8 7 11 11 C 1.34829 * 116.99660 * 174.18611 * 10 9 8 12 12 H 1.08001 * 120.00139 * 5.05352 * 11 10 9 13 13 C 1.38657 * 119.99856 * 185.05736 * 11 10 9 14 14 N 1.31559 * 119.99982 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00027 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46813 * 90.00246 * 15 13 11 17 17 H 1.48495 * 109.47176 * 210.00133 * 15 13 11 18 18 H 1.48499 * 109.47156 * 330.00610 * 15 13 11 19 19 C 1.38756 * 120.03808 * 179.97438 * 5 4 2 20 20 H 1.09002 * 109.47153 * 300.00040 * 1 2 3 21 21 H 1.09000 * 109.47149 * 59.99867 * 1 2 3 22 22 H 1.08998 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46753 * 239.99848 * 2 1 3 24 24 H 1.08994 * 109.46937 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47135 * 300.00141 * 3 2 1 26 26 H 1.09002 * 109.47058 * 59.99901 * 3 2 1 27 27 H 0.96996 * 120.00233 * 264.99493 * 4 2 1 28 28 H 1.08000 * 119.96982 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.93052 * 179.97438 * 7 6 5 30 30 H 1.07994 * 119.96332 * 180.29346 * 8 7 6 31 31 H 0.96998 * 119.99940 * 179.97438 * 14 13 11 32 32 H 1.07995 * 120.07467 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1517 -2.0810 1.1943 6 6 1.8208 -2.8102 0.0581 7 6 1.9521 -4.1855 0.0559 8 6 2.4177 -4.8399 1.1803 9 6 2.7445 -4.1174 2.3210 10 8 3.1964 -4.7618 3.4270 11 6 3.6093 -3.9950 4.4563 12 1 3.4956 -2.9220 4.4099 13 6 4.1800 -4.5840 5.5743 14 7 4.5824 -3.8359 6.5788 15 14 4.3762 -6.4399 5.6547 16 1 5.6938 -6.8235 5.0871 17 1 4.2981 -6.8851 7.0693 18 1 3.2927 -7.0866 4.8717 19 6 2.6146 -2.7359 2.3266 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.2490 -0.1824 1.9894 28 1 1.4608 -2.3013 -0.8238 29 1 1.6940 -4.7500 -0.8279 30 1 2.5236 -5.9146 1.1738 31 1 4.9813 -4.2479 7.3611 32 1 2.8727 -2.1717 3.2106 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037069702.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:42 Heat of formation + Delta-G solvation = -26.033801 kcal Electronic energy + Delta-G solvation = -14589.768703 eV Core-core repulsion = 12129.005022 eV Total energy + Delta-G solvation = -2460.763681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89629 -39.11849 -36.94360 -34.42876 -33.06203 -30.67525 -29.16337 -28.04274 -27.08870 -23.44540 -23.15048 -21.30858 -19.74468 -19.20063 -17.24628 -16.93033 -16.45259 -15.93052 -15.66621 -15.43186 -15.10511 -14.64129 -14.16217 -14.12852 -13.91308 -13.27737 -13.08087 -12.98143 -12.71276 -12.52694 -12.25510 -12.15584 -11.94474 -11.73097 -11.37589 -11.00278 -10.66935 -9.17994 -8.48740 -8.24093 -6.21212 0.73999 0.88927 1.31523 1.36626 1.53102 2.29524 2.56592 2.82638 3.15229 3.26339 3.96623 4.19038 4.21457 4.32555 4.47606 4.59544 4.68126 4.77192 4.84870 4.92587 4.96856 5.03102 5.14931 5.28390 5.39699 5.45462 5.49344 5.76127 5.85250 5.91088 6.19034 6.62614 6.85635 6.86343 7.63526 8.63157 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039911 B = 0.006893 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.400278 B = 4060.933313 C = 4624.192606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 C -0.154 4.154 4 N -0.745 5.745 5 C 0.253 3.747 6 C -0.259 4.259 7 C -0.027 4.027 8 C -0.252 4.252 9 C 0.158 3.842 10 O -0.246 6.246 11 C -0.397 4.397 12 H 0.078 0.922 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.972 3.028 16 H -0.265 1.265 17 H -0.266 1.266 18 H -0.264 1.264 19 C -0.315 4.315 20 H 0.050 0.950 21 H 0.085 0.915 22 H 0.046 0.954 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.395 0.605 28 H 0.143 0.857 29 H 0.158 0.842 30 H 0.121 0.879 31 H 0.284 0.716 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.593 6.015 -14.906 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 C -0.212 4.212 4 N -0.374 5.374 5 C 0.148 3.852 6 C -0.281 4.281 7 C -0.045 4.045 8 C -0.273 4.273 9 C 0.108 3.892 10 O -0.153 6.153 11 C -0.473 4.473 12 H 0.095 0.905 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.794 3.206 16 H -0.190 1.190 17 H -0.191 1.191 18 H -0.188 1.188 19 C -0.339 4.339 20 H 0.069 0.931 21 H 0.104 0.896 22 H 0.065 0.935 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.229 0.771 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.557 5.890 -14.849 17.267 hybrid contribution 0.425 -0.130 1.228 1.306 sum -6.132 5.760 -13.620 16.009 Atomic orbital electron populations 1.22266 0.95384 1.01934 1.02684 1.21084 0.94111 0.93562 0.87733 1.22028 1.01354 0.94158 1.03669 1.44979 1.73123 1.02483 1.16833 1.17639 0.90530 0.84506 0.92505 1.20651 1.15047 0.94219 0.98219 1.20900 0.93277 0.93866 0.96483 1.20318 1.14415 0.99947 0.92643 1.19414 0.91797 0.91264 0.86713 1.83520 1.73618 1.35997 1.22168 1.20695 1.40089 0.91776 0.94753 0.90472 1.25294 0.95071 1.04903 0.93685 1.69733 1.41428 1.38028 1.07490 0.85204 0.79538 0.77951 0.77925 1.19021 1.19106 1.18790 1.20590 1.18686 0.94441 1.00182 0.93097 0.89599 0.93468 0.89981 0.92656 0.88941 0.92177 0.77116 0.83910 0.82432 0.86056 0.90644 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.43 71.98 0.68 -2.42 16 2 C 0.14 2.91 2.88 44.99 0.13 3.04 16 3 C -0.15 -2.50 9.38 71.98 0.68 -1.83 16 4 N -0.74 -21.87 5.25 -319.02 -1.67 -23.54 16 5 C 0.25 9.29 6.63 38.20 0.25 9.54 16 6 C -0.26 -8.18 8.85 22.43 0.20 -7.98 16 7 C -0.03 -0.86 10.03 22.23 0.22 -0.63 16 8 C -0.25 -10.25 9.99 22.42 0.22 -10.02 16 9 C 0.16 7.83 6.64 22.56 0.15 7.98 16 10 O -0.25 -13.99 8.58 -22.73 -0.20 -14.18 16 11 C -0.40 -24.27 9.95 67.92 0.68 -23.60 16 12 H 0.08 4.97 5.43 -2.91 -0.02 4.95 16 13 C 0.01 0.50 5.49 84.83 0.47 0.96 16 14 N -0.93 -56.60 13.96 21.61 0.30 -56.29 16 15 Si 0.97 46.76 28.62 68.60 1.96 48.72 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 19 C -0.32 -14.68 9.01 22.52 0.20 -14.48 16 20 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.05 1.04 7.70 -2.39 -0.02 1.02 16 23 H 0.08 1.65 6.48 -2.39 -0.02 1.64 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.39 11.60 8.61 -92.71 -0.80 10.81 16 28 H 0.14 3.53 6.10 -2.91 -0.02 3.51 16 29 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 30 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 32 H 0.10 5.23 5.64 -2.91 -0.02 5.21 16 Total: -1.00 -68.57 271.11 4.60 -63.98 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.32 Total: 20.77 kcal Atomic # 6 Polarization: -43.32 SS G_CDS: 3.88 Total: -39.45 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.37 Total: -79.84 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.20 Total: -14.18 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.96 Total: 48.72 kcal Total: -68.57 4.60 -63.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069702.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.943 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds