Wall clock time and date at job start Sun Mar 29 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38115 * 120.40246 * 2 1 4 4 C 1.39625 * 118.33717 * 179.97438 * 3 2 1 5 5 N 1.38536 * 120.53451 * 179.72367 * 4 3 2 6 6 C 1.46502 * 120.00071 * 184.99681 * 5 4 3 7 7 C 1.46502 * 120.00271 * 5.00410 * 5 4 3 8 8 C 1.50702 * 109.46950 * 89.99446 * 7 5 4 9 9 H 1.07995 * 120.00664 * 0.02562 * 8 7 5 10 10 C 1.37875 * 119.99775 * 180.02562 * 8 7 5 11 11 N 1.31520 * 120.00313 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00166 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99768 * 12 10 8 14 14 H 1.48500 * 109.47275 * 210.00160 * 12 10 8 15 15 H 1.48498 * 109.47144 * 329.99653 * 12 10 8 16 16 N 1.32995 * 118.93597 * 0.02562 * 4 3 2 17 17 C 1.31749 * 120.68414 * 359.97438 * 16 4 3 18 18 C 1.50704 * 119.08173 * 180.02562 * 17 16 4 19 19 N 1.31793 * 121.83541 * 0.02562 * 17 16 4 20 20 H 1.09000 * 109.47065 * 89.99670 * 1 2 3 21 21 H 1.09002 * 109.46841 * 209.99924 * 1 2 3 22 22 H 1.08999 * 109.47234 * 329.99964 * 1 2 3 23 23 H 1.07997 * 120.83191 * 359.95808 * 3 2 1 24 24 H 1.09001 * 109.46521 * 90.00466 * 6 5 4 25 25 H 1.09004 * 109.47521 * 210.00163 * 6 5 4 26 26 H 1.08997 * 109.47304 * 330.00685 * 6 5 4 27 27 H 1.08997 * 109.47454 * 209.99776 * 7 5 4 28 28 H 1.09000 * 109.46452 * 330.00305 * 7 5 4 29 29 H 0.96998 * 120.00255 * 179.97438 * 11 10 8 30 30 H 1.09004 * 109.47001 * 269.99672 * 18 17 16 31 31 H 1.08990 * 109.47017 * 30.00157 * 18 17 16 32 32 H 1.09002 * 109.47100 * 150.00560 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1409 0.0005 5 7 4.3477 2.3080 -0.0052 6 6 5.8071 2.2436 -0.1151 7 6 3.6776 3.6066 0.0988 8 6 3.5518 3.9922 1.5502 9 1 3.9332 3.3359 2.3184 10 6 2.9498 5.1829 1.8975 11 7 2.4848 5.9821 0.9621 12 14 2.7945 5.6613 3.6965 13 1 3.9937 6.4340 4.1085 14 1 1.5799 6.4949 3.8840 15 1 2.6862 4.4351 4.5271 16 7 4.2024 -0.0454 0.0005 17 6 3.4956 -1.1573 0.0005 18 6 4.2140 -2.4820 0.0011 19 7 2.1777 -1.1433 0.0000 20 1 -0.3633 0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.6862 2.1379 -0.0007 24 1 6.0938 2.2708 -1.1663 25 1 6.2486 3.0944 0.4040 26 1 6.1649 1.3177 0.3353 27 1 4.2624 4.3605 -0.4281 28 1 2.6850 3.5399 -0.3467 29 1 2.0609 6.8196 1.2064 30 1 4.3876 -2.8017 -1.0265 31 1 5.1693 -2.3770 0.5152 32 1 3.6047 -3.2256 0.5148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037756792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:37 Heat of formation + Delta-G solvation = 43.267677 kcal Electronic energy + Delta-G solvation = -14843.672580 eV Core-core repulsion = 12418.206788 eV Total energy + Delta-G solvation = -2425.465793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30506 -36.51448 -33.81764 -32.86860 -31.41869 -28.72155 -28.42267 -27.16334 -25.10086 -23.29834 -21.35335 -20.18914 -17.04467 -16.64111 -16.13243 -14.86610 -14.74077 -14.34088 -13.73272 -13.64184 -13.40598 -13.04048 -12.44290 -12.23442 -12.15520 -11.89781 -11.86734 -11.49494 -11.35157 -11.00412 -10.77831 -10.33759 -10.23976 -9.84808 -9.58961 -8.85932 -8.60568 -8.52556 -7.04454 -6.18845 -4.28517 1.72019 2.09183 3.20969 3.27957 3.32360 3.74699 4.30968 4.48317 4.55836 4.84021 5.12145 5.38244 5.63303 5.78260 5.84501 5.88026 5.88752 5.94071 6.03919 6.09670 6.25782 6.30251 6.39342 6.45424 6.88103 7.08743 7.13582 7.50756 7.74248 8.01571 8.16881 8.20986 8.77274 8.98474 9.38954 10.85561 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029457 B = 0.008339 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.309668 B = 3356.798380 C = 3791.227112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.186 3.814 3 C -0.282 4.282 4 C 0.448 3.552 5 N -0.578 5.578 6 C 0.100 3.900 7 C 0.248 3.752 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.064 3.936 11 N -0.893 5.893 12 Si 0.899 3.101 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.273 1.273 16 N -0.594 5.594 17 C 0.346 3.654 18 C -0.076 4.076 19 N -0.581 5.581 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.147 0.853 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.266 0.734 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -9.695 -2.387 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.046 3.954 3 C -0.311 4.311 4 C 0.204 3.796 5 N -0.287 5.287 6 C -0.044 4.044 7 C 0.129 3.871 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.726 3.274 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.198 1.198 16 N -0.322 5.322 17 C 0.076 3.924 18 C -0.135 4.135 19 N -0.304 5.304 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.165 0.835 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.922 -10.089 -2.422 10.417 hybrid contribution -0.465 1.400 1.010 1.788 sum 0.457 -8.689 -1.412 8.815 Atomic orbital electron populations 1.20657 0.88889 1.03297 1.02774 1.21194 0.96644 0.87855 0.89748 1.22104 0.94034 1.00804 1.14129 1.18573 0.88480 0.86357 0.86219 1.47042 1.05672 1.04106 1.71851 1.21481 0.80423 1.02545 0.99931 1.19468 0.93376 0.76899 0.97390 1.21506 1.39210 1.04668 0.92156 0.92178 1.24943 0.94933 0.96006 0.97968 1.69922 1.38917 1.11663 1.32609 0.86476 0.77746 0.78584 0.84592 1.20452 1.20933 1.19807 1.67719 1.41337 0.97528 1.25624 1.22652 0.86715 0.93459 0.89542 1.20414 0.99563 0.90544 1.02949 1.67966 1.09203 1.30049 1.23167 0.90558 0.90738 0.90445 0.83510 0.94285 0.91401 0.91290 0.94260 0.94257 0.92449 0.90480 0.90376 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.21 36.00 0.37 -1.04 16 2 C 0.19 3.48 6.81 -82.33 -0.56 2.92 16 3 C -0.28 -5.93 9.00 -39.11 -0.35 -6.28 16 4 C 0.45 9.82 7.39 -154.78 -1.14 8.68 16 5 N -0.58 -12.81 2.96 -182.92 -0.54 -13.35 16 6 C 0.10 1.87 10.51 59.85 0.63 2.50 16 7 C 0.25 6.13 5.03 -5.19 -0.03 6.10 16 8 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -24.94 13.29 55.43 0.74 -24.21 16 12 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 N -0.59 -12.15 9.13 -9.96 -0.09 -12.25 16 17 C 0.35 6.41 7.64 -157.23 -1.20 5.20 16 18 C -0.08 -1.01 10.32 36.01 0.37 -0.64 16 19 N -0.58 -10.98 10.27 -7.07 -0.07 -11.05 16 20 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 22 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 23 H 0.15 3.18 6.16 -52.49 -0.32 2.85 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 26 H 0.07 1.24 7.34 -51.93 -0.38 0.86 16 27 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.04 1.01 6.05 -51.93 -0.31 0.69 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -29.80 277.02 -7.51 -37.31 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -4.36 Total: -0.88 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.34 Total: 4.28 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.03 Total: -60.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.80 -7.51 -37.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037756792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.581 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds